HL_4V9D_048

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_048 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.1627

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V9D|1|BA|C|522
4V9D|1|BA|A|523
4V9D|1|BA|G|524
4V9D|1|BA|C|525
4V9D|1|BA|C|526
4V9D|1|BA|G|527

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12