HL_4V9D_086

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V9D|1|CA|U|546, 4V9D|1|CA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_086 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3509

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9D|1|CA|G|543
4V9D|1|CA|C|544
4V9D|1|CA|U|545
4V9D|1|CA|U|546
4V9D|1|CA|A|547
4V9D|1|CA|G|548
4V9D|1|CA|G|549
4V9D|1|CA|C|550

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CJ

50S ribosomal protein L13

Chain CR

50S ribosomal protein L21