HL_4V9D_106

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4V9D|1|CA|A|1453, 4V9D|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_106 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2299

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9D|1|CA|C|1451
4V9D|1|CA|G|1452
4V9D|1|CA|A|1453
4V9D|1|CA|C|1454
4V9D|1|CA|G|1455
4V9D|1|CA|G|1456
4V9D|1|CA|U|1457
4V9D|1|CA|U|1458
4V9D|1|CA|G|1459

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L17