HL_4V9D_121

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_121 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.3076

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

4V9D|1|CA|C|2143
4V9D|1|CA|G|2144
4V9D|1|CA|C|2145
4V9D|1|CA|C|2146
4V9D|1|CA|A|2147
4V9D|1|CA|G|2148

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AK

30S ribosomal protein S11

Chain BA

Small subunit ribosomal RNA; SSU rRNA