HL_4V9D_125

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGUCGGACAUCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_125 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3996

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V9D|1|CA|U|2302
4V9D|1|CA|G|2303
4V9D|1|CA|G|2304
4V9D|1|CA|U|2305
4V9D|1|CA|C|2306
4V9D|1|CA|G|2307
4V9D|1|CA|G|2308
4V9D|1|CA|A|2309
4V9D|1|CA|C|2310
4V9D|1|CA|A|2311
4V9D|1|CA|U|2312
4V9D|1|CA|C|2313
4V9D|1|CA|A|2314

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CF

50S ribosomal protein L5