HL_4V9D_136

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V9D|1|CA|G|2751, 4V9D|1|CA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_136 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.052

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V9D|1|CA|C|2745
4V9D|1|CA|U|2746
4V9D|1|CA|G|2747
4V9D|1|CA|A|2748
4V9D|1|CA|A|2749
4V9D|1|CA|A|2750
4V9D|1|CA|G|2751
4V9D|1|CA|C|2752
4V9D|1|CA|A|2753
4V9D|1|CA|U|2754
4V9D|1|CA|C|2755
4V9D|1|CA|U|2756
4V9D|1|CA|A|2757
4V9D|1|CA|A|2758
4V9D|1|CA|G|2759

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CJ

50S ribosomal protein L13