HL_4V9D_200

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

4V9D|1|DA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_200 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0884

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V9D|1|DA|U|2404
4V9D|1|DA|G|2405
4V9D|1|DA|A|2406
4V9D|1|DA|A|2407
4V9D|1|DA|U|2408
4V9D|1|DA|G|2409
4V9D|1|DA|G|2410
4V9D|1|DA|A|2411
4V9D|1|DA|A|2412
4V9D|1|DA|G|2413

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DL

50S ribosomal protein L15