HL_4V9D_229

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

4V9D|1|DA|U|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_229 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5121

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V9D|1|DA|G|1091
4V9D|1|DA|C|1092
4V9D|1|DA|G|1093
4V9D|1|DA|U|1094
4V9D|1|DA|A|1095
4V9D|1|DA|A|1096
4V9D|1|DA|U|1097
4V9D|1|DA|A|1098
4V9D|1|DA|G|1099
4V9D|1|DA|C|1100

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DI

50S ribosomal protein L11