HL_4V9F_032

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66836.1

Basepair signature

cWW-cWS-R

Number of instances in this motif group

11

Unit IDs

4V9F|1|0|A|1274
4V9F|1|0|C|1275
4V9F|1|0|U|1276
4V9F|1|0|C|1277
4V9F|1|0|A|1278
4V9F|1|0|U|1279
4V9F|1|0|A|1280
4V9F|1|0|C|1281
4V9F|1|0|U|1282

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L18e

Chain Y

50S ribosomal protein L32e