HL_4V9H_085

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V9H|1|BA|A|2030, 4V9H|1|BA|A|2031, 4V9H|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9H_085 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0754

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V9H|1|BA|G|2027
4V9H|1|BA|U|2028
4V9H|1|BA|G|2029
4V9H|1|BA|A|2030
4V9H|1|BA|A|2031
4V9H|1|BA|G|2032
4V9H|1|BA|A|2033
4V9H|1|BA|U|2034
4V9H|1|BA|G|2035
4V9H|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3