HL_4V9H_096

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4V9H|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9H_096 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0791

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V9H|1|BA|U|2528
4V9H|1|BA|G|2529
4V9H|1|BA|A|2530
4V9H|1|BA|A|2531
4V9H|1|BA|G|2532
4V9H|1|BA|A|2533
4V9H|1|BA|A|2534
4V9H|1|BA|G|2535

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

Elongation factor G

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6