HL_4V9I_007

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_007 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0882

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9I|1|AA|U|296
4V9I|1|AA|G|297
4V9I|1|AA|A|298
4V9I|1|AA|G|299
4V9I|1|AA|A|300
4V9I|1|AA|G|301

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal protein S4

Chain AE

30S Ribosomal protein S5

Chain AQ

30S Ribosomal protein S17