4V9I Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V9I_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_4V9I_003 | 1/AA/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.3 | |
| HL_4V9I_004 | 1/AA/189C:189H | No text annotation | homologous HL_6CZR_075 NA | |
| HL_4V9I_005 | 1/AA/200:217 | No text annotation | homologous HL_6CZR_076 NA | |
| HL_4V9I_006 | 1/AA/259:267 | GNRA related | homologous HL_4LFB_006 HL_87268.2 | |
| HL_4V9I_007 | 1/AA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.3 | |
| HL_4V9I_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4V9I_009 | 1/AA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V9I_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.3 | |
| HL_4V9I_011 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_4V9I_012 | 1/AA/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.3 | |
| HL_4V9I_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_4V9I_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_4V9I_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_4V9I_016 | 1/AA/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.3 | |
| HL_4V9I_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_4V9I_018 | 1/AA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V9I_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.3 | |
| HL_4V9I_020 | 1/AA/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_4V9I_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V9I_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.3 | |
| HL_4V9I_023 | 1/AA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.3 | |
| HL_4V9I_024 | 1/AA/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_4V9I_227 | 1/AA/1124:1149 | No text annotation | ||
| HL_4V9I_025 | 1/AA/1128:1143 | No text annotation | ||
| HL_4V9I_026 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.3 | |
| HL_4V9I_027 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.3 | |
| HL_4V9I_028 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V9I_029 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4V9I_030 | 1/AA/1445:1457 | UNCG | homologous HL_5J7L_030 NA | |
| HL_4V9I_031 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.3 | |
| HL_4V9I_032 | 1/AV/13:23 | tRNA D-loop | homologous HL_5B63_003 HL_20490.1 | |
| HL_4V9I_033 | 1/AV/32:40 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.3 | |
| HL_4V9I_034 | 1/AV/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4WT8_217 HL_33597.3 | |
| HL_4V9I_035 | 1/AW/13:22 | No text annotation | homologous HL_6GSL_208 NA | |
| HL_4V9I_036 | 1/AW/30:40 | No text annotation | homologous HL_4V7M_039 HL_14063.2 | |
| HL_4V9I_038 | 1/AY/11:24 | No text annotation | ||
| HL_4V9I_039 | 1/AY/31:39 | tRNA anticodon loop | ||
| HL_4V9I_040 | 1/AY/52:62 | No text annotation | ||
| HL_4V9I_041 | 1/BA/57:66 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V9I_042 | 1/BA/85:93 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_4V9I_043 | 1/BA/120:125 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_4V9I_044 | 1/BA/135:140 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V9I_046 | 1/BA/182:189 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V9I_047 | 1/BA/213:218 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V9I_048 | 1/BA/234:240 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V9I_049 | 1/BA/269:272 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V9I_050 | 1/BA/328:335 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V9I_051 | 1/BA/342:346 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4V9I_052 | 1/BA/350:358 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4V9I_229 | 1/BA/409:417 | No text annotation | ||
| HL_4V9I_054 | 1/BA/436:443 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V9I_055 | 1/BA/487:492 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V9I_056 | 1/BA/512:517 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V9I_058 | 1/BA/588:597 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V9I_059 | 1/BA/634:640 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V9I_060 | 1/BA/653:658 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V9I_061 | 1/BA/665:671 | GNRA | homologous HL_4WF9_021 HL_34789.3 | |
| HL_4V9I_062 | 1/BA/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V9I_063 | 1/BA/790:799 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V9I_064 | 1/BA/825:831 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_4V9I_065 | 1/BA/872:877 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_4V9I_067 | 1/BA/999:1006 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V9I_068 | 1/BA/1023:1030 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V9I_070 | 1/BA/1216:1222 | No text annotation | ||
| HL_4V9I_071 | 1/BA/1267:1272 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V9I_072 | 1/BA/1326:1334 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V9I_073 | 1/BA/1369:1375 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V9I_074 | 1/BA/1408:1413 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V9I_075 | 1/BA/1434:1443 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V9I_076 | 1/BA/1497:1507 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_4V9I_077 | 1/BA/1537:1543 | No text annotation | ||
| HL_4V9I_079 | 1/BA/1611:1614 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V9I_080 | 1/BA/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V9I_081 | 1/BA/1676:1681 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V9I_082 | 1/BA/1737:1742 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_4V9I_241 | 1/BA/1763:1771 | No text annotation | homologous HL_5J7L_214 NA | |
| HL_4V9I_084 | 1/BA/1782:1786 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V9I_085 | 1/BA/1807:1817 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_4V9I_086 | 1/BA/1836:1841 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V9I_087 | 1/BA/1894:1899 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V9I_088 | 1/BA/1931:1941 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V9I_089 | 1/BA/1970:1978 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V9I_090 | 1/BA/2048:2057 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V9I_091 | 1/BA/2164:2169 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_4V9I_092 | 1/BA/2225:2230 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_4V9I_093 | 1/BA/2259:2267 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V9I_094 | 1/BA/2275:2287 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V9I_230 | 1/BA/2315:2323 | No text annotation | ||
| HL_4V9I_096 | 1/BA/2335:2342 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V9I_097 | 1/BA/2366:2373 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V9I_098 | 1/BA/2385:2390 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V9I_099 | 1/BA/2415:2424 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V9I_100 | 1/BA/2482:2490 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4V9I_101 | 1/BA/2539:2546 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V9I_102 | 1/BA/2562:2568 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4V9I_103 | 1/BA/2605:2610 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V9I_104 | 1/BA/2669:2674 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_4V9I_105 | 1/BA/2712:2717 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V9I_106 | 1/BA/2757:2771 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V9I_108 | 1/BA/2828:2836 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V9I_109 | 1/BA/2865:2870 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V9I_231 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4V9I_110 | 1/BB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V9I_111 | 1/BB/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.3 | |
| HL_4V9I_112 | 1/CA/13:23 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_4V9I_232 | 1/CA/77:87 | No text annotation | ||
| HL_4V9I_114 | 1/CA/153:158 | GNRA | homologous HL_4LFB_003 HL_34789.3 | |
| HL_4V9I_115 | 1/CA/187:192 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_4V9I_116 | 1/CA/207:213 | No text annotation | homologous HL_6CZR_076 NA | |
| HL_4V9I_117 | 1/CA/255:263 | GNRA related | homologous HL_4LFB_006 HL_87268.2 | |
| HL_4V9I_118 | 1/CA/292:297 | GNRA | homologous HL_4LFB_007 HL_34789.3 | |
| HL_4V9I_119 | 1/CA/316:329 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4V9I_120 | 1/CA/338:343 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V9I_121 | 1/CA/375:380 | GNRA | homologous HL_4LFB_010 HL_34789.3 | |
| HL_4V9I_122 | 1/CA/415:420 | UNCG | homologous HL_5J7L_011 NA | |
| HL_4V9I_123 | 1/CA/453:459 | GNRA | homologous HL_4LFB_012 HL_34789.3 | |
| HL_4V9I_124 | 1/CA/506:511 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_4V9I_125 | 1/CA/601:607 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_4V9I_126 | 1/CA/673:682 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_4V9I_127 | 1/CA/710:715 | GNRA | homologous HL_4LFB_016 HL_34789.3 | |
| HL_4V9I_128 | 1/CA/770:780 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_4V9I_129 | 1/CA/822:826 | Mini UNCG | homologous HL_4LFB_018 HL_90436.3 | |
| HL_4V9I_130 | 1/CA/840:845 | GNRA | homologous HL_4LFB_019 HL_34789.3 | |
| HL_4V9I_131 | 1/CA/875:880 | GNRA | homologous HL_4LFB_020 HL_34789.3 | |
| HL_4V9I_132 | 1/CA/941:950 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V9I_133 | 1/CA/991:996 | GNRA | homologous HL_4LFB_022 HL_34789.3 | |
| HL_4V9I_134 | 1/CA/1059:1064 | GNRA | homologous HL_4LFB_024 HL_34789.3 | |
| HL_4V9I_135 | 1/CA/1072:1079 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_4V9I_242 | 1/CA/1107:1132 | No text annotation | ||
| HL_4V9I_136 | 1/CA/1111:1126 | No text annotation | ||
| HL_4V9I_137 | 1/CA/1148:1153 | GNRA | homologous HL_4LFB_027 HL_34789.3 | |
| HL_4V9I_138 | 1/CA/1247:1252 | GNRA | homologous HL_4LFB_028 HL_34789.3 | |
| HL_4V9I_139 | 1/CA/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V9I_140 | 1/CA/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4V9I_141 | 1/CA/1430:1435 | UNCG | homologous HL_5J7L_030 NA | |
| HL_4V9I_142 | 1/CA/1493:1498 | GNRA | homologous HL_4LFB_032 HL_34789.3 | |
| HL_4V9I_143 | 1/CV/13:23 | tRNA D-loop | homologous HL_4TUE_033 NA | |
| HL_4V9I_144 | 1/CV/32:40 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_4V9I_145 | 1/CV/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4YCO_003 HL_33597.3 | |
| HL_4V9I_147 | 1/CW/30:40 | No text annotation | homologous HL_4WSM_225 HL_14063.2 | |
| HL_4V9I_236 | 1/CW/49:65 | No text annotation | homologous HL_5E81_221 NA | |
| HL_4V9I_149 | 1/CY/11:24 | No text annotation | homologous HL_4V9I_038 NA | |
| HL_4V9I_151 | 1/CY/52:62 | No text annotation | homologous HL_4V9I_040 NA | |
| HL_4V9I_152 | 1/DA/57:66 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V9I_153 | 1/DA/85:93 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V9I_154 | 1/DA/120:125 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V9I_155 | 1/DA/135:140 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V9I_157 | 1/DA/182:189 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V9I_158 | 1/DA/213:218 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V9I_159 | 1/DA/234:240 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V9I_160 | 1/DA/269:272 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_4V9I_161 | 1/DA/328:335 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V9I_162 | 1/DA/342:346 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4V9I_163 | 1/DA/350:358 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_4V9I_237 | 1/DA/409:417 | No text annotation | ||
| HL_4V9I_165 | 1/DA/436:443 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V9I_166 | 1/DA/487:492 | GNRA | homologous HL_5J7L_147 NA | |
| HL_4V9I_167 | 1/DA/512:517 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V9I_169 | 1/DA/588:597 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V9I_170 | 1/DA/634:640 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V9I_171 | 1/DA/653:658 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V9I_172 | 1/DA/665:671 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V9I_173 | 1/DA/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V9I_174 | 1/DA/790:799 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V9I_175 | 1/DA/825:831 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_4V9I_176 | 1/DA/872:877 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V9I_238 | 1/DA/928:939 | No text annotation | ||
| HL_4V9I_177 | 1/DA/929:938 | No text annotation | ||
| HL_4V9I_178 | 1/DA/999:1006 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V9I_179 | 1/DA/1023:1030 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V9I_243 | 1/DA/1216:1222 | No text annotation | ||
| HL_4V9I_182 | 1/DA/1267:1272 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V9I_183 | 1/DA/1326:1334 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V9I_184 | 1/DA/1369:1375 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V9I_185 | 1/DA/1408:1413 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V9I_186 | 1/DA/1434:1443 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V9I_187 | 1/DA/1497:1507 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_4V9I_188 | 1/DA/1537:1543 | No text annotation | ||
| HL_4V9I_190 | 1/DA/1611:1614 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V9I_191 | 1/DA/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V9I_192 | 1/DA/1676:1681 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V9I_193 | 1/DA/1737:1742 | UNCG | geometric HL_1KUQ_001 HL_61337.3 | |
| HL_4V9I_244 | 1/DA/1763:1771 | No text annotation | homologous HL_5J7L_214 NA | |
| HL_4V9I_195 | 1/DA/1782:1786 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V9I_196 | 1/DA/1807:1817 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V9I_197 | 1/DA/1836:1841 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V9I_198 | 1/DA/1894:1899 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V9I_199 | 1/DA/1931:1941 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V9I_200 | 1/DA/1970:1978 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V9I_201 | 1/DA/2048:2057 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V9I_202 | 1/DA/2164:2169 | No text annotation | homologous HL_7RQB_051 NA | |
| HL_4V9I_203 | 1/DA/2225:2230 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_4V9I_204 | 1/DA/2259:2267 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_4V9I_205 | 1/DA/2275:2287 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V9I_245 | 1/DA/2315:2323 | No text annotation | ||
| HL_4V9I_207 | 1/DA/2335:2342 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V9I_208 | 1/DA/2366:2373 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V9I_209 | 1/DA/2385:2390 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V9I_210 | 1/DA/2415:2424 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V9I_211 | 1/DA/2482:2490 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_4V9I_212 | 1/DA/2539:2546 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V9I_213 | 1/DA/2562:2568 | No text annotation | homologous HL_7A0S_061 HL_48677.1 | |
| HL_4V9I_214 | 1/DA/2605:2610 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V9I_215 | 1/DA/2669:2674 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_4V9I_216 | 1/DA/2712:2717 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V9I_217 | 1/DA/2757:2771 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V9I_219 | 1/DA/2828:2836 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V9I_220 | 1/DA/2865:2870 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V9I_240 | 1/DB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4V9I_221 | 1/DB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V9I_222 | 1/DB/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V9I_002 | No text annotation | ||
| HL_4V9I_223 | No text annotation | ||
| HL_4V9I_224 | GNRA with extra near cWW | ||
| HL_4V9I_225 | tRNA D-loop | ||
| HL_4V9I_226 | No text annotation | ||
| HL_4V9I_228 | No text annotation | ||
| HL_4V9I_037 | T-loop with 2 stacked bulged bases | ||
| HL_4V9I_045 | No text annotation | ||
| HL_4V9I_053 | No text annotation | ||
| HL_4V9I_057 | No text annotation | ||
| HL_4V9I_066 | No text annotation | ||
| HL_4V9I_069 | No text annotation | ||
| HL_4V9I_078 | No text annotation | ||
| HL_4V9I_083 | No text annotation | ||
| HL_4V9I_095 | No text annotation | ||
| HL_4V9I_107 | tRNA D-loop | ||
| HL_4V9I_113 | No text annotation | ||
| HL_4V9I_233 | No text annotation | ||
| HL_4V9I_234 | No text annotation | ||
| HL_4V9I_235 | No text annotation | ||
| HL_4V9I_146 | No text annotation | ||
| HL_4V9I_148 | No text annotation | ||
| HL_4V9I_150 | tRNA anticodon loop | ||
| HL_4V9I_156 | No text annotation | ||
| HL_4V9I_164 | No text annotation | ||
| HL_4V9I_168 | No text annotation | ||
| HL_4V9I_180 | No text annotation | ||
| HL_4V9I_181 | No text annotation | ||
| HL_4V9I_189 | No text annotation | ||
| HL_4V9I_194 | tRNA D-loop | ||
| HL_4V9I_239 | No text annotation | ||
| HL_4V9I_206 | No text annotation | ||
| HL_4V9I_218 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V9I_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_4V9I_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_4V9I_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_4V9I_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.3 | |
| IL_4V9I_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.2 | |
| IL_4V9I_006 | 1/AA/67:69, 1/AA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.3 | |
| IL_4V9I_008 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_4V9I_009 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_4V9I_010 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_4V9I_011 | 1/AA/186:188, 1/AA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.3 | |
| IL_4V9I_012 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4V9I_013 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_4V9I_014 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_4V9I_015 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_4V9I_373 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_4V9I_017 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_4V9I_018 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4V9I_019 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_4V9I_374 | 1/AA/450:455, 1/AA/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V9I_021 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_4V9I_022 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9I_023 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4V9I_024 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_4V9I_025 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_4V9I_026 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_4V9I_027 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4V9I_028 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_4V9I_029 | 1/AA/657:658, 1/AA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_4V9I_030 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_4V9I_357 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_4V9I_032 | 1/AA/683:688, 1/AA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V9I_033 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_4V9I_034 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_4V9I_035 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_4V9I_036 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_4V9I_037 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_4V9I_038 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_4V9I_039 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.3 | |
| IL_4V9I_040 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_4V9I_375 | 1/AA/1001:1007, 1/AA/1022:1040 | No text annotation | ||
| IL_4V9I_043 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.3 | |
| IL_4V9I_044 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4V9I_045 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_4V9I_046 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_97561.3 | |
| IL_4V9I_047 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.3 | |
| IL_4V9I_049 | 1/AA/1124:1128, 1/AA/1143:1149 | No text annotation | geometric IL_4LFB_048 IL_89862.1 | |
| IL_4V9I_050 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4V9I_051 | 1/AA/1255:1259, 1/AA/1276:1282 | No text annotation | ||
| IL_4V9I_358 | 1/AA/1255:1262, 1/AA/1273:1282 | No text annotation | ||
| IL_4V9I_052 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_4V9I_053 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_4V9I_054 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_4V9I_055 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9I_056 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_4V9I_057 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_4V9I_058 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4V9I_059 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4V9I_060 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.7 | |
| IL_4V9I_061 | 1/AA/1435:1437, 1/AA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.3 | |
| IL_4V9I_062 | 1/AA/1440:1443, 1/AA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_34117.1 | |
| IL_4V9I_359 | 1/AW/7:27, 1/AW/43:66 | No text annotation | ||
| IL_4V9I_064 | 1/BA/23:29, 1/BA/534:540 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V9I_065 | 1/BA/35:36, 1/BA/467:469 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V9I_066 | 1/BA/41:42, 1/BA/460:462 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V9I_067 | 1/BA/79:83, 1/BA/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V9I_068 | 1/BA/171:172, 1/BA/200:202 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V9I_069 | 1/BA/176:182, 1/BA/189:196 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V9I_070 | 1/BA/227:233, 1/BA/241:246 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V9I_071 | 1/BA/268:269, 1/BA/272:274 | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4V9I_072 | 1/BA/290:291, 1/BA/391:393 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V9I_074 | 1/BA/303:307, 1/BA/380:383 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V9I_075 | 1/BA/311:313, 1/BA/373:376 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V9I_076 | 1/BA/316:318, 1/BA/366:370 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V9I_077 | 1/BA/506:509, 1/BA/520:533 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V9I_078 | 1/BA/586:588, 1/BA/597:599 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4V9I_079 | 1/BA/628:632, 1/BA/642:646 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_4V9I_080 | 1/BA/718:720, 1/BA/852:854 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V9I_081 | 1/BA/720:724, 1/BA/845:852 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
| IL_4V9I_082 | 1/BA/743:744, 1/BA/809:811 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V9I_083 | 1/BA/748:749, 1/BA/774:776 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_4V9I_084 | 1/BA/749:753, 1/BA/770:774 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V9I_085 | 1/BA/784:787, 1/BA/802:804 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V9I_086 | 1/BA/821:823, 1/BA/833:837 | Multiple bulged bases | homologous IL_4WF9_027 IL_89509.1 | |
| IL_4V9I_087 | 1/BA/883:884, 1/BA/984:986 | Single stack bend | homologous IL_4WF9_028 IL_15011.2 | |
| IL_4V9I_088 | 1/BA/890:892, 1/BA/975:978 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V9I_360 | 1/BA/890:896, 1/BA/972:978 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V9I_089 | 1/BA/892:896, 1/BA/972:975 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V9I_090 | 1/BA/904:908, 1/BA/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V9I_091 | 1/BA/908:909, 1/BA/958:960 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4V9I_092 | 1/BA/910:914, 1/BA/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V9I_094 | 1/BA/921:923, 1/BA/944:947 | Minor groove platform with extra cWW | homologous IL_7RQB_031 NA | |
| IL_4V9I_095 | 1/BA/923:925, 1/BA/943:944 | Minor groove platform | geometric IL_7RQB_032 NA | |
| IL_4V9I_096 | 1/BA/926:927, 1/BA/940:942 | Single bulged A | geometric IL_4WF9_002 IL_14190.2 | |
| IL_4V9I_098 | 1/BA/996:998, 1/BA/1007:1009 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V9I_099 | 1/BA/1039:1041, 1/BA/1204:1205 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_4V9I_100 | 1/BA/1043:1047, 1/BA/1198:1202 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V9I_101 | 1/BA/1049:1056, 1/BA/1195:1196 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4V9I_102 | 1/BA/1056:1058, 1/BA/1194:1195 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4V9I_103 | 1/BA/1063:1069, 1/BA/1184:1189 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_4V9I_104 | 1/BA/1069:1075, 1/BA/1169:1184 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V9I_105 | 1/BA/1076:1079, 1/BA/1166:1168 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V9I_106 | 1/BA/1240:1242, 1/BA/1292:1295 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V9I_107 | 1/BA/1246:1250, 1/BA/1285:1288 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V9I_108 | 1/BA/1252:1259, 1/BA/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V9I_109 | 1/BA/1263:1265, 1/BA/1274:1275 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V9I_110 | 1/BA/1307:1314, 1/BA/2032:2038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V9I_111 | 1/BA/1355:1358, 1/BA/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V9I_112 | 1/BA/1364:1368, 1/BA/1376:1378 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V9I_113 | 1/BA/1396:1400, 1/BA/1421:1425 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V9I_114 | 1/BA/1402:1406, 1/BA/1415:1419 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V9I_115 | 1/BA/1460:1461, 1/BA/1628:1632 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V9I_116 | 1/BA/1462:1466, 1/BA/1623:1627 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4V9I_117 | 1/BA/1478:1480, 1/BA/1603:1606 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V9I_118 | 1/BA/1482:1485, 1/BA/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V9I_119 | 1/BA/1494:1496, 1/BA/1508:1509 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V9I_120 | 1/BA/1515:1519, 1/BA/1565:1568 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V9I_121 | 1/BA/1527:1528, 1/BA/1551:1557 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V9I_123 | 1/BA/1534:1536, 1/BA/1544:1545 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_4V9I_124 | 1/BA/1697:1702, 1/BA/2025:2027 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V9I_125 | 1/BA/1709:1711, 1/BA/2016:2018 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V9I_126 | 1/BA/1712:1715, 1/BA/2014:2015 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V9I_361 | 1/BA/1712:1720, 1/BA/2011:2015 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4V9I_127 | 1/BA/1715:1720, 1/BA/2011:2014 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V9I_128 | 1/BA/1732:1737, 1/BA/1742:1748 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4V9I_129 | 1/BA/1800:1801, 1/BA/2001:2003 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V9I_130 | 1/BA/1828:1834, 1/BA/1843:1851 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V9I_131 | 1/BA/1867:1870, 1/BA/1923:1924 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4V9I_132 | 1/BA/1871:1872, 1/BA/1919:1922 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4V9I_133 | 1/BA/1876:1879, 1/BA/1914:1915 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V9I_134 | 1/BA/1881:1885, 1/BA/1908:1912 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_4V9I_135 | 1/BA/1886:1890, 1/BA/1903:1907 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V9I_136 | 1/BA/1954:1955, 1/BA/1985:1988 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4V9I_137 | 1/BA/1955:1966, 1/BA/1982:1985 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_4V9I_138 | 1/BA/2071:2073, 1/BA/2628:2629 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V9I_139 | 1/BA/2075:2078, 1/BA/2622:2626 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V9I_140 | 1/BA/2088:2090, 1/BA/2453:2454 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V9I_141 | 1/BA/2091:2092, 1/BA/2449:2452 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V9I_142 | 1/BA/2102:2104, 1/BA/2247:2250 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V9I_143 | 1/BA/2106:2108, 1/BA/2243:2245 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V9I_145 | 1/BA/2129:2141, 1/BA/2199:2202 | No text annotation | ||
| IL_4V9I_147 | 1/BA/2145:2148, 1/BA/2182:2195 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V9I_151 | 1/BA/2308:2310, 1/BA/2328:2332 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_4V9I_152 | 1/BA/2361:2364, 1/BA/2375:2378 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V9I_153 | 1/BA/2412:2414, 1/BA/2425:2426 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_4V9I_154 | 1/BA/2464:2465, 1/BA/2509:2511 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V9I_155 | 1/BA/2465:2466, 1/BA/2507:2509 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V9I_156 | 1/BA/2468:2470, 1/BA/2504:2505 | Major groove platform | homologous IL_4WF9_091 IL_48076.8 | |
| IL_4V9I_157 | 1/BA/2470:2472, 1/BA/2500:2504 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V9I_158 | 1/BA/2477:2481, 1/BA/2491:2495 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V9I_159 | 1/BA/2518:2519, 1/BA/2591:2593 | Major groove platform | homologous IL_4WF9_094 IL_46637.2 | |
| IL_4V9I_160 | 1/BA/2521:2523, 1/BA/2585:2589 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4V9I_161 | 1/BA/2523:2524, 1/BA/2582:2585 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_4V9I_162 | 1/BA/2533:2534, 1/BA/2551:2554 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.2 | |
| IL_4V9I_163 | 1/BA/2602:2603, 1/BA/2612:2614 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V9I_164 | 1/BA/2647:2651, 1/BA/2786:2794 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V9I_165 | 1/BA/2663:2669, 1/BA/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V9I_166 | 1/BA/2691:2695, 1/BA/2737:2739 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V9I_167 | 1/BA/2698:2702, 1/BA/2730:2734 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V9I_168 | 1/BA/2706:2707, 1/BA/2722:2726 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V9I_169 | 1/BA/2749:2754, 1/BA/2774:2779 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V9I_170 | 1/BA/2847:2848, 1/BA/2887:2889 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V9I_171 | 1/BA/2852:2855, 1/BA/2879:2883 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V9I_172 | 1/BA/2856:2861, 1/BA/2874:2878 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V9I_173 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V9I_175 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V9I_176 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4V9I_177 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V9I_178 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V9I_180 | 1/CA/31:33, 1/CA/536:537 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_4V9I_181 | 1/CA/45:46, 1/CA/392:394 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_4V9I_182 | 1/CA/48:53, 1/CA/355:357 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_4V9I_183 | 1/CA/55:57, 1/CA/352:353 | Minor groove platform | homologous IL_4LFB_004 IL_34520.3 | |
| IL_4V9I_184 | 1/CA/64:67, 1/CA/97:98 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V9I_185 | 1/CA/68:70, 1/CA/94:96 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.3 | |
| IL_4V9I_187 | 1/CA/123:126, 1/CA/227:228 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_4V9I_188 | 1/CA/127:131, 1/CA/223:226 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_4V9I_189 | 1/CA/143:148, 1/CA/163:169 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_4V9I_190 | 1/CA/181:183, 1/CA/196:198 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.3 | |
| IL_4V9I_191 | 1/CA/238:243, 1/CA/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4V9I_192 | 1/CA/245:248, 1/CA/270:271 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_4V9I_193 | 1/CA/288:289, 1/CA/300:304 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_4V9I_194 | 1/CA/363:365, 1/CA/388:389 | Single bulged U | homologous IL_4LFB_014 IL_97561.3 | |
| IL_4V9I_376 | 1/CA/367:371, 1/CA/385:386 | C-loop | homologous IL_5J7L_018 NA | |
| IL_4V9I_196 | 1/CA/371:372, 1/CA/383:385 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_4V9I_197 | 1/CA/405:412, 1/CA/423:429 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4V9I_198 | 1/CA/441:445, 1/CA/468:473 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_4V9I_199 | 1/CA/445:450, 1/CA/462:468 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V9I_200 | 1/CA/488:495, 1/CA/524:525 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_4V9I_201 | 1/CA/499:505, 1/CA/512:520 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9I_202 | 1/CA/553:559, 1/CA/858:859 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4V9I_203 | 1/CA/564:568, 1/CA/741:745 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_4V9I_204 | 1/CA/578:580, 1/CA/628:629 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_4V9I_205 | 1/CA/581:582, 1/CA/624:627 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_4V9I_206 | 1/CA/589:596, 1/CA/612:617 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4V9I_207 | 1/CA/638:639, 1/CA/735:738 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_4V9I_208 | 1/CA/641:642, 1/CA/731:733 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_4V9I_209 | 1/CA/646:650, 1/CA/724:727 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_4V9I_365 | 1/CA/657:661, 1/CA/697:701 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.3 | |
| IL_4V9I_211 | 1/CA/667:672, 1/CA/683:691 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V9I_212 | 1/CA/758:762, 1/CA/788:789 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_4V9I_213 | 1/CA/763:767, 1/CA/783:787 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_4V9I_214 | 1/CA/865:872, 1/CA/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_4V9I_215 | 1/CA/900:901, 1/CA/1376:1378 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_4V9I_216 | 1/CA/903:905, 1/CA/1373:1374 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_4V9I_217 | 1/CA/911:913, 1/CA/1363:1367 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_4V9I_377 | 1/CA/931:932, 1/CA/1208:1210 | Minor groove platform | homologous IL_4LFB_038 IL_34520.3 | |
| IL_4V9I_219 | 1/CA/971:975, 1/CA/1027:1028 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_4V9I_378 | 1/CA/979:986, 1/CA/1001:1023 | No text annotation | ||
| IL_4V9I_222 | 1/CA/1031:1033, 1/CA/1190:1191 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_4V9I_366 | 1/CA/1035:1039, 1/CA/1186:1188 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_4V9I_224 | 1/CA/1040:1041, 1/CA/1181:1185 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_4V9I_225 | 1/CA/1043:1044, 1/CA/1177:1179 | Single bulged U | geometric IL_4LFB_046 IL_97561.3 | |
| IL_4V9I_226 | 1/CA/1044:1046, 1/CA/1175:1177 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.3 | |
| IL_4V9I_228 | 1/CA/1107:1110, 1/CA/1128:1132 | No text annotation | ||
| IL_4V9I_229 | 1/CA/1110:1111, 1/CA/1126:1128 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_4V9I_230 | 1/CA/1229:1235, 1/CA/1266:1272 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4V9I_231 | 1/CA/1237:1244, 1/CA/1255:1264 | No text annotation | ||
| IL_4V9I_232 | 1/CA/1285:1290, 1/CA/1311:1316 | No text annotation | homologous IL_4LFB_055 IL_57885.2 | |
| IL_4V9I_233 | 1/CA/1382:1384, 1/CA/1479:1482 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V9I_234 | 1/CA/1384:1387, 1/CA/1475:1479 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9I_235 | 1/CA/1388:1390, 1/CA/1472:1474 | Isolated non-canonical cWW pair | geometric IL_5MWI_005 NA | |
| IL_4V9I_236 | 1/CA/1390:1392, 1/CA/1469:1472 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_4V9I_237 | 1/CA/1395:1397, 1/CA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4V9I_238 | 1/CA/1399:1402, 1/CA/1459:1462 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4V9I_239 | 1/CA/1414:1418, 1/CA/1444:1447 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.7 | |
| IL_4V9I_240 | 1/CA/1418:1420, 1/CA/1442:1444 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.3 | |
| IL_4V9I_241 | 1/CA/1423:1428, 1/CA/1437:1439 | No text annotation | homologous IL_4LFB_064 IL_34117.1 | |
| IL_4V9I_244 | 1/DA/23:29, 1/DA/534:540 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V9I_245 | 1/DA/35:36, 1/DA/467:469 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V9I_379 | 1/DA/41:42, 1/DA/460:462 | Minor groove platform | homologous IL_7A0S_003 IL_34520.3 | |
| IL_4V9I_247 | 1/DA/79:83, 1/DA/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V9I_248 | 1/DA/171:172, 1/DA/200:202 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V9I_249 | 1/DA/176:182, 1/DA/189:196 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V9I_250 | 1/DA/227:233, 1/DA/241:246 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V9I_251 | 1/DA/268:269, 1/DA/272:274 | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4V9I_252 | 1/DA/290:291, 1/DA/391:393 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V9I_254 | 1/DA/303:307, 1/DA/380:383 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V9I_255 | 1/DA/311:313, 1/DA/373:376 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V9I_256 | 1/DA/316:318, 1/DA/366:370 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V9I_257 | 1/DA/506:509, 1/DA/520:533 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V9I_258 | 1/DA/586:588, 1/DA/597:599 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4V9I_259 | 1/DA/628:632, 1/DA/642:646 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_4V9I_260 | 1/DA/718:720, 1/DA/852:854 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V9I_261 | 1/DA/720:724, 1/DA/845:852 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
| IL_4V9I_262 | 1/DA/743:744, 1/DA/809:811 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_4V9I_263 | 1/DA/748:749, 1/DA/774:776 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V9I_264 | 1/DA/749:753, 1/DA/770:774 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V9I_265 | 1/DA/784:787, 1/DA/802:804 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_36931.2 | |
| IL_4V9I_266 | 1/DA/821:823, 1/DA/833:837 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V9I_267 | 1/DA/883:884, 1/DA/984:986 | Single stack bend | homologous IL_5J7L_266 NA | |
| IL_4V9I_268 | 1/DA/890:892, 1/DA/975:978 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4V9I_368 | 1/DA/890:896, 1/DA/972:978 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V9I_269 | 1/DA/892:896, 1/DA/972:975 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4V9I_270 | 1/DA/904:908, 1/DA/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4V9I_271 | 1/DA/908:909, 1/DA/958:960 | Minor groove platform | geometric IL_4WF9_032 IL_34520.3 | |
| IL_4V9I_272 | 1/DA/910:914, 1/DA/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V9I_274 | 1/DA/921:923, 1/DA/944:947 | No text annotation | geometric IL_8VTW_030 NA | |
| IL_4V9I_369 | 1/DA/921:925, 1/DA/943:947 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_4V9I_275 | 1/DA/923:925, 1/DA/943:944 | No text annotation | geometric IL_8VTW_031 NA | |
| IL_4V9I_276 | 1/DA/926:927, 1/DA/940:942 | Single bulged A | geometric IL_7A0S_002 IL_14190.2 | |
| IL_4V9I_278 | 1/DA/996:998, 1/DA/1007:1009 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V9I_279 | 1/DA/1039:1041, 1/DA/1204:1205 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_4V9I_280 | 1/DA/1043:1047, 1/DA/1198:1202 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V9I_281 | 1/DA/1049:1056, 1/DA/1195:1196 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_4V9I_282 | 1/DA/1056:1058, 1/DA/1194:1195 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_4V9I_283 | 1/DA/1063:1069, 1/DA/1184:1189 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_4V9I_284 | 1/DA/1069:1075, 1/DA/1169:1184 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V9I_285 | 1/DA/1076:1079, 1/DA/1166:1168 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V9I_286 | 1/DA/1240:1242, 1/DA/1292:1295 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V9I_287 | 1/DA/1246:1250, 1/DA/1285:1288 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V9I_288 | 1/DA/1252:1259, 1/DA/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V9I_289 | 1/DA/1263:1265, 1/DA/1274:1275 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V9I_290 | 1/DA/1307:1314, 1/DA/2032:2038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V9I_291 | 1/DA/1355:1358, 1/DA/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V9I_292 | 1/DA/1364:1368, 1/DA/1376:1378 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V9I_293 | 1/DA/1396:1400, 1/DA/1421:1425 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V9I_294 | 1/DA/1402:1406, 1/DA/1415:1419 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_05821.1 | |
| IL_4V9I_295 | 1/DA/1460:1461, 1/DA/1628:1632 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V9I_296 | 1/DA/1462:1466, 1/DA/1623:1627 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4V9I_297 | 1/DA/1478:1480, 1/DA/1603:1606 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V9I_298 | 1/DA/1482:1485, 1/DA/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V9I_299 | 1/DA/1494:1496, 1/DA/1508:1509 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V9I_300 | 1/DA/1515:1519, 1/DA/1565:1568 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V9I_380 | 1/DA/1527:1530, 1/DA/1549:1557 | No text annotation | ||
| IL_4V9I_302 | 1/DA/1534:1536, 1/DA/1544:1545 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_4V9I_303 | 1/DA/1697:1702, 1/DA/2025:2027 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V9I_304 | 1/DA/1709:1711, 1/DA/2016:2018 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V9I_305 | 1/DA/1712:1715, 1/DA/2014:2015 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4V9I_370 | 1/DA/1712:1720, 1/DA/2011:2015 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4V9I_306 | 1/DA/1715:1720, 1/DA/2011:2014 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4V9I_307 | 1/DA/1732:1737, 1/DA/1742:1748 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4V9I_308 | 1/DA/1800:1801, 1/DA/2001:2003 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V9I_309 | 1/DA/1828:1834, 1/DA/1843:1851 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V9I_310 | 1/DA/1867:1870, 1/DA/1923:1924 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4V9I_311 | 1/DA/1871:1872, 1/DA/1919:1922 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4V9I_312 | 1/DA/1876:1879, 1/DA/1914:1915 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V9I_313 | 1/DA/1881:1885, 1/DA/1908:1912 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_4V9I_314 | 1/DA/1886:1890, 1/DA/1903:1907 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V9I_315 | 1/DA/1954:1955, 1/DA/1985:1988 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4V9I_316 | 1/DA/1955:1966, 1/DA/1982:1985 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_4V9I_317 | 1/DA/2071:2073, 1/DA/2628:2629 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V9I_318 | 1/DA/2075:2078, 1/DA/2622:2626 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_4V9I_319 | 1/DA/2088:2090, 1/DA/2453:2454 | Single bulged U | homologous IL_7A0S_075 IL_97561.3 | |
| IL_4V9I_320 | 1/DA/2091:2092, 1/DA/2449:2452 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V9I_321 | 1/DA/2102:2104, 1/DA/2247:2250 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V9I_322 | 1/DA/2106:2108, 1/DA/2243:2245 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V9I_324 | 1/DA/2129:2141, 1/DA/2199:2202 | No text annotation | ||
| IL_4V9I_325 | 1/DA/2145:2148, 1/DA/2182:2195 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V9I_327 | 1/DA/2308:2310, 1/DA/2328:2332 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_4V9I_328 | 1/DA/2361:2364, 1/DA/2375:2378 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V9I_329 | 1/DA/2412:2414, 1/DA/2425:2426 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_4V9I_330 | 1/DA/2464:2465, 1/DA/2509:2511 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V9I_331 | 1/DA/2465:2466, 1/DA/2507:2509 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V9I_332 | 1/DA/2468:2470, 1/DA/2504:2505 | Major groove platform | homologous IL_4WF9_091 IL_48076.8 | |
| IL_4V9I_333 | 1/DA/2470:2472, 1/DA/2500:2504 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V9I_334 | 1/DA/2477:2481, 1/DA/2491:2495 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V9I_335 | 1/DA/2518:2519, 1/DA/2591:2593 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V9I_336 | 1/DA/2521:2523, 1/DA/2585:2589 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V9I_337 | 1/DA/2523:2524, 1/DA/2582:2585 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4V9I_338 | 1/DA/2533:2534, 1/DA/2551:2554 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4V9I_339 | 1/DA/2602:2603, 1/DA/2612:2614 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V9I_340 | 1/DA/2647:2651, 1/DA/2786:2794 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_4V9I_341 | 1/DA/2663:2669, 1/DA/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_4WF9_100 IL_16458.6 | |
| IL_4V9I_342 | 1/DA/2691:2695, 1/DA/2737:2739 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V9I_343 | 1/DA/2698:2702, 1/DA/2730:2734 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V9I_344 | 1/DA/2706:2707, 1/DA/2722:2726 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.2 | |
| IL_4V9I_345 | 1/DA/2749:2754, 1/DA/2774:2779 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_4V9I_346 | 1/DA/2847:2848, 1/DA/2887:2889 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V9I_347 | 1/DA/2852:2855, 1/DA/2879:2883 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V9I_348 | 1/DA/2856:2861, 1/DA/2874:2878 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V9I_349 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V9I_351 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V9I_352 | 1/DB/30:31, 1/DB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4V9I_353 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V9I_354 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V9I_007 | Isolated cWH basepair | ||
| IL_4V9I_016 | No text annotation | ||
| IL_4V9I_356 | No text annotation | ||
| IL_4V9I_020 | No text annotation | ||
| IL_4V9I_031 | No text annotation | ||
| IL_4V9I_041 | Isolated non-canonical cWW pair | ||
| IL_4V9I_042 | No text annotation | ||
| IL_4V9I_048 | Isolated non-canonical cWW pair | ||
| IL_4V9I_063 | No text annotation | ||
| IL_4V9I_073 | No text annotation | ||
| IL_4V9I_093 | Isolated cWS basepair | ||
| IL_4V9I_097 | Isolated non-canonical cWW pair | ||
| IL_4V9I_122 | No text annotation | ||
| IL_4V9I_144 | Isolated cWH basepair | ||
| IL_4V9I_362 | No text annotation | ||
| IL_4V9I_146 | Isolated non-canonical cWW pair | ||
| IL_4V9I_148 | Isolated non-canonical cWW pair | ||
| IL_4V9I_363 | No text annotation | ||
| IL_4V9I_149 | Kink-turn | ||
| IL_4V9I_150 | Isolated non-canonical cWW pair | ||
| IL_4V9I_174 | Isolated cWH basepair | ||
| IL_4V9I_364 | No text annotation | ||
| IL_4V9I_179 | Isolated non-canonical cWW pair | ||
| IL_4V9I_186 | Isolated cWH basepair | ||
| IL_4V9I_195 | No text annotation | ||
| IL_4V9I_210 | No text annotation | ||
| IL_4V9I_218 | Minor groove platform with extra cWW | ||
| IL_4V9I_220 | Isolated non-canonical cWW pair | ||
| IL_4V9I_221 | No text annotation | ||
| IL_4V9I_223 | Tandem non-canonical cWW pairs | ||
| IL_4V9I_367 | Isolated non-canonical cWW pair | ||
| IL_4V9I_227 | Isolated non-canonical cWW pair | ||
| IL_4V9I_242 | No text annotation | ||
| IL_4V9I_243 | No text annotation | ||
| IL_4V9I_246 | Major groove platform with extra cWW | ||
| IL_4V9I_253 | No text annotation | ||
| IL_4V9I_273 | Isolated cWS basepair | ||
| IL_4V9I_277 | Isolated non-canonical cWW pair | ||
| IL_4V9I_301 | No text annotation | ||
| IL_4V9I_323 | Isolated cWH basepair | ||
| IL_4V9I_371 | No text annotation | ||
| IL_4V9I_326 | Kink-turn | ||
| IL_4V9I_372 | Kink-turn | ||
| IL_4V9I_350 | Isolated cWH basepair | ||
| IL_4V9I_355 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V9I_032 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_4V9I_033 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_4V9I_034 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4V9I_035 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4V9I_036 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V9I_001 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_4V9I_002 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4V9I_003 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_4V9I_004 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4V9I_005 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_4V9I_037 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_4V9I_006 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4V9I_067 | 1/AA/1073:1074, 1/AA/1083:1086, 1/AA/1099:1102 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_4V9I_007 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_4V9I_008 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_4V9I_039 | 1/BA/29:30, 1/BA/499:506, 1/BA/533:534 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V9I_040 | 1/BA/29:30, 1/BA/499:509, 1/BA/520:534 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_4V9I_041 | 1/BA/31:34, 1/BA/470:486, 1/BA/493:498 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_4V9I_042 | 1/BA/54:55, 1/BA/68:74, 1/BA/107:111 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_4V9I_043 | 1/BA/320:324, 1/BA/339:348, 1/BA/360:364 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4V9I_009 | 1/BA/729:735, 1/BA/819:821, 1/BA/837:840 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_4V9I_010 | 1/BA/744:746, 1/BA/778:782, 1/BA/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V9I_011 | 1/BA/1343:1348, 1/BA/1670:1672, 1/BA/1685:1688 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V9I_012 | 1/BA/1351:1354, 1/BA/1650:1656, 1/BA/1665:1667 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V9I_044 | 1/BA/1389:1395, 1/BA/1426:1430, 1/BA/1447:1448 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_4V9I_045 | 1/BA/1469:1474, 1/BA/1610:1611, 1/BA/1614:1620 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4V9I_013 | 1/BA/2112:2114, 1/BA/2217:2221, 1/BA/2234:2239 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V9I_046 | 1/BA/2293:2295, 1/BA/2395:2406, 1/BA/2432:2438 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_4V9I_014 | 1/BA/2306:2308, 1/BA/2332:2334, 1/BA/2343:2348 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V9I_015 | 1/BA/2528:2531, 1/BA/2556:2558, 1/BA/2572:2578 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V9I_047 | 1/BA/2823:2824, 1/BA/2840:2845, 1/BA/2891:2895 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V9I_048 | 1/BB/11:16, 1/BB/68:69, 1/BB/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_4V9I_049 | 1/CA/47:48, 1/CA/357:363, 1/CA/389:391 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_4V9I_050 | 1/CA/47:53, 1/CA/355:363, 1/CA/389:391 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_4V9I_051 | 1/CA/570:572, 1/CA/635:638, 1/CA/738:739 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_4V9I_052 | 1/CA/570:572, 1/CA/635:639, 1/CA/735:739 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4V9I_053 | 1/CA/656:657, 1/CA/701:709, 1/CA/716:718 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V9I_016 | 1/CA/810:813, 1/CA/835:839, 1/CA/846:852 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_4V9I_017 | 1/CA/914:917, 1/CA/1326:1332, 1/CA/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4V9I_018 | 1/CA/921:924, 1/CA/1217:1219, 1/CA/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_4V9I_068 | 1/CA/933:940, 1/CA/951:962, 1/CA/1203:1207 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4V9I_020 | 1/CA/968:971, 1/CA/1028:1030, 1/CA/1192:1197 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_4V9I_054 | 1/CA/968:975, 1/CA/1027:1030, 1/CA/1192:1197 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_4V9I_021 | 1/CA/1046:1051, 1/CA/1090:1096, 1/CA/1169:1175 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4V9I_055 | 1/CA/1056:1057, 1/CA/1066:1070, 1/CA/1081:1085 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V9I_022 | 1/CA/1099:1101, 1/CA/1138:1144, 1/CA/1157:1166 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_4V9I_023 | 1/CA/1219:1223, 1/CA/1278:1285, 1/CA/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_4V9I_056 | 1/CW/4:10, 1/CW/25:49, 1/CW/65:69 | No text annotation | ||
| J3_4V9I_057 | 1/DA/29:30, 1/DA/499:506, 1/DA/533:534 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V9I_058 | 1/DA/29:30, 1/DA/499:509, 1/DA/520:534 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_4V9I_059 | 1/DA/31:34, 1/DA/470:486, 1/DA/493:498 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_4V9I_060 | 1/DA/54:55, 1/DA/68:74, 1/DA/107:111 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_4V9I_061 | 1/DA/320:324, 1/DA/339:348, 1/DA/360:364 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4V9I_024 | 1/DA/729:735, 1/DA/819:821, 1/DA/837:840 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_4V9I_025 | 1/DA/744:746, 1/DA/778:782, 1/DA/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V9I_026 | 1/DA/1343:1348, 1/DA/1670:1672, 1/DA/1685:1688 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V9I_027 | 1/DA/1351:1354, 1/DA/1650:1656, 1/DA/1665:1667 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V9I_062 | 1/DA/1389:1395, 1/DA/1426:1430, 1/DA/1447:1448 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_4V9I_063 | 1/DA/1469:1474, 1/DA/1610:1611, 1/DA/1614:1620 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4V9I_028 | 1/DA/2112:2114, 1/DA/2217:2221, 1/DA/2234:2239 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V9I_064 | 1/DA/2293:2295, 1/DA/2395:2406, 1/DA/2432:2438 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_4V9I_029 | 1/DA/2306:2308, 1/DA/2332:2334, 1/DA/2343:2348 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V9I_030 | 1/DA/2528:2531, 1/DA/2556:2558, 1/DA/2572:2578 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V9I_065 | 1/DA/2823:2824, 1/DA/2840:2845, 1/DA/2891:2895 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V9I_066 | 1/DB/11:16, 1/DB/68:69, 1/DB/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J4_4V9I_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4V9I_002 | 1/AA/142:144, 1/AA/178:183, 1/AA/194:198, 1/AA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V9I_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_4V9I_004 | 1/AV/7:10, 1/AV/26:28, 1/AV/44:50, 1/AV/66:67 | tRNA junction | homologous J4_4WT8_034 J4_95067.1 | |
| J4_4V9I_005 | 1/BA/256:257, 1/BA/396:401, 1/BA/425:432, 1/BA/447:450 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4V9I_006 | 1/BA/320:324, 1/BA/339:342, 1/BA/346:348, 1/BA/360:364 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4V9I_007 | 1/BA/1315:1321, 1/BA/1339:1340, 1/BA/1691:1694, 1/BA/2030:2031 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4V9I_008 | 1/BA/1355:1359, 1/BA/1383:1388, 1/BA/1449:1450, 1/BA/1642:1649 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_4V9I_009 | 1/BA/1358:1359, 1/BA/1383:1388, 1/BA/1449:1450, 1/BA/1642:1648 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_4V9I_010 | 1/BA/1489:1491, 1/BA/1512:1513, 1/BA/1570:1571, 1/BA/1592:1593 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4V9I_011 | 1/BA/1802:1806, 1/BA/1818:1822, 1/BA/1857:1860, 1/BA/1996:2000 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_4V9I_012 | 1/BA/1863:1865, 1/BA/1926:1927, 1/BA/1945:1954, 1/BA/1988:1993 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4V9I_013 | 1/BA/2296:2300, 1/BA/2354:2358, 1/BA/2381:2383, 1/BA/2392:2394 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_4V9I_014 | 1/BA/2654:2657, 1/BA/2685:2687, 1/BA/2743:2747, 1/BA/2781:2783 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_4V9I_015 | 1/CA/109:116, 1/CA/235:236, 1/CA/282:285, 1/CA/307:308 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4V9I_016 | 1/CA/137:139, 1/CA/173:178, 1/CA/201:205, 1/CA/215:217 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V9I_017 | 1/CA/559:561, 1/CA/748:753, 1/CA/794:805, 1/CA/857:858 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_4V9I_018 | 1/CV/7:10, 1/CV/26:28, 1/CV/44:50, 1/CV/66:67 | tRNA junction | homologous J4_4TUE_004 NA | |
| J4_4V9I_019 | 1/DA/256:257, 1/DA/396:401, 1/DA/425:432, 1/DA/447:450 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4V9I_020 | 1/DA/320:324, 1/DA/339:342, 1/DA/346:348, 1/DA/360:364 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4V9I_021 | 1/DA/1315:1321, 1/DA/1339:1340, 1/DA/1691:1694, 1/DA/2030:2031 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4V9I_022 | 1/DA/1355:1359, 1/DA/1383:1388, 1/DA/1449:1450, 1/DA/1642:1649 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_4V9I_023 | 1/DA/1358:1359, 1/DA/1383:1388, 1/DA/1449:1450, 1/DA/1642:1648 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_4V9I_024 | 1/DA/1489:1491, 1/DA/1512:1513, 1/DA/1570:1571, 1/DA/1592:1593 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4V9I_025 | 1/DA/1802:1806, 1/DA/1818:1822, 1/DA/1857:1860, 1/DA/1996:2000 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_4V9I_026 | 1/DA/1863:1865, 1/DA/1926:1927, 1/DA/1945:1954, 1/DA/1988:1993 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4V9I_027 | 1/DA/2296:2300, 1/DA/2354:2358, 1/DA/2381:2383, 1/DA/2392:2394 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_4V9I_028 | 1/DA/2654:2657, 1/DA/2685:2687, 1/DA/2743:2747, 1/DA/2781:2783 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J5_4V9I_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V9I_017 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_4V9I_003 | 1/BA/45:52, 1/BA/113:118, 1/BA/127:128, 1/BA/147:149, 1/BA/164:166 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4V9I_004 | 1/BA/555:557, 1/BA/582:586, 1/BA/599:601, 1/BA/1306:1307, 1/BA/2038:2039 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_4V9I_005 | 1/BA/606:611, 1/BA/714:717, 1/BA/855:858, 1/BA/1239:1240, 1/BA/1295:1301 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_4V9I_006 | 1/BA/1720:1728, 1/BA/1752:1753, 1/BA/1781:1782, 1/BA/1786:1794, 1/BA/2009:2011 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_4V9I_007 | 1/BA/2078:2085, 1/BA/2457:2464, 1/BA/2511:2518, 1/BA/2593:2599, 1/BA/2617:2622 | No text annotation | ||
| J5_4V9I_008 | 1/BA/2095:2098, 1/BA/2254:2257, 1/BA/2269:2270, 1/BA/2292:2293, 1/BA/2438:2446 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_4V9I_009 | 1/CA/37:40, 1/CA/399:402, 1/CA/432:437, 1/CA/477:484, 1/CA/529:532 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V9I_010 | 1/CA/59:62, 1/CA/100:107, 1/CA/310:312, 1/CA/333:335, 1/CA/346:350 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_4V9I_011 | 1/DA/45:52, 1/DA/113:118, 1/DA/127:128, 1/DA/147:149, 1/DA/164:166 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4V9I_012 | 1/DA/555:557, 1/DA/582:586, 1/DA/599:601, 1/DA/1306:1307, 1/DA/2038:2039 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_4V9I_013 | 1/DA/606:611, 1/DA/714:717, 1/DA/855:858, 1/DA/1239:1240, 1/DA/1295:1301 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_4V9I_014 | 1/DA/1720:1728, 1/DA/1752:1753, 1/DA/1781:1782, 1/DA/1786:1794, 1/DA/2009:2011 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_4V9I_015 | 1/DA/2078:2085, 1/DA/2457:2464, 1/DA/2511:2518, 1/DA/2593:2599, 1/DA/2617:2622 | No text annotation | ||
| J5_4V9I_016 | 1/DA/2095:2098, 1/DA/2254:2257, 1/DA/2269:2270, 1/DA/2292:2293, 1/DA/2438:2446 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J6_4V9I_001 | 1/BA/43:44, 1/BA/167:171, 1/BA/202:212, 1/BA/219:223, 1/BA/250:254, 1/BA/452:459 | No text annotation | ||
| J6_4V9I_002 | 1/BA/2095:2098, 1/BA/2254:2257, 1/BA/2269:2270, 1/BA/2292:2295, 1/BA/2395:2406, 1/BA/2432:2446 | No text annotation | ||
| J6_4V9I_003 | 1/DA/43:44, 1/DA/167:171, 1/DA/202:212, 1/DA/219:223, 1/DA/250:254, 1/DA/452:459 | No text annotation | ||
| J6_4V9I_004 | 1/DA/2095:2098, 1/DA/2254:2257, 1/DA/2269:2270, 1/DA/2292:2295, 1/DA/2395:2406, 1/DA/2432:2446 | No text annotation | ||
| J7_4V9I_001 | 1/BA/863:868, 1/BA/881:882, 1/BA/987:990, 1/BA/1015:1021, 1/BA/1032:1036, 1/BA/1208:1209, 1/BA/1229:1234 | No text annotation | ||
| J7_4V9I_002 | 1/DA/863:868, 1/DA/881:882, 1/DA/987:990, 1/DA/1015:1021, 1/DA/1032:1036, 1/DA/1208:1209, 1/DA/1229:1234 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V9I_038 | No text annotation | ||
| J3_4V9I_019 | No text annotation | ||
| J3_4V9I_031 | No text annotation | ||
| J5_4V9I_002 | No text annotation |
Coloring options: