HL_4V9I_066

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_066 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5588

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

4V9I|1|BA|C|930
4V9I|1|BA|C|931
4V9I|1|BA|C|932
4V9I|1|BA|A|933
4V9I|1|BA|C|934
4V9I|1|BA|C|935
4V9I|1|BA|A|936
4V9I|1|BA|G|937

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AM

30S Ribosomal protein S13