HL_4V9I_075

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V9I|1|BA|U|1441, 4V9I|1|BA|U|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_075 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0743

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V9I|1|BA|G|1434
4V9I|1|BA|U|1435
4V9I|1|BA|U|1436
4V9I|1|BA|A|1437
4V9I|1|BA|A|1438
4V9I|1|BA|U|1439
4V9I|1|BA|A|1440
4V9I|1|BA|U|1441
4V9I|1|BA|U|1442
4V9I|1|BA|C|1443

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L23