HL_4V9I_076

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V9I|1|BA|U|1500, 4V9I|1|BA|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_076 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5123

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V9I|1|BA|C|1497
4V9I|1|BA|C|1498
4V9I|1|BA|A|1499
4V9I|1|BA|U|1500
4V9I|1|BA|G|1501
4V9I|1|BA|G|1502
4V9I|1|BA|A|1503
4V9I|1|BA|C|1504
4V9I|1|BA|G|1505
4V9I|1|BA|A|1506
4V9I|1|BA|G|1507

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17