HL_4V9I_080

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V9I|1|BA|A|1659, 4V9I|1|BA|A|1661, 4V9I|1|BA|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_080 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1104

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V9I|1|BA|C|1657
4V9I|1|BA|G|1658
4V9I|1|BA|A|1659
4V9I|1|BA|C|1660
4V9I|1|BA|A|1661
4V9I|1|BA|C|1662
4V9I|1|BA|A|1663
4V9I|1|BA|G|1664

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BW

50S ribosomal protein L22