HL_4V9I_095

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

4V9I|1|BA|G|2318, 4V9I|1|BA|A|2322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_095 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3549

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V9I|1|BA|G|2314
4V9I|1|BA|G|2315
4V9I|1|BA|A|2316
4V9I|1|BA|C|2317
4V9I|1|BA|G|2318
4V9I|1|BA|G|2319
4V9I|1|BA|A|2320
4V9I|1|BA|A|2321
4V9I|1|BA|A|2322
4V9I|1|BA|U|2323
4V9I|1|BA|C|2324

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5