HL_4V9I_096
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_096 not in the Motif Atlas
- Homologous match to HL_7RQB_056
- Geometric discrepancy: 0.0622
- The information below is about HL_7RQB_056
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_12078.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
4V9I|1|BA|C|2335
4V9I|1|BA|G|2336
4V9I|1|BA|C|2337
4V9I|1|BA|A|2338
4V9I|1|BA|A|2339
4V9I|1|BA|G|2340
4V9I|1|BA|G|2341
4V9I|1|BA|G|2342
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain BG
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L16
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