HL_4V9I_107

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

4V9I|1|BA|U|2808

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_107 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3587

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V9I|1|BA|G|2804
4V9I|1|BA|G|2805
4V9I|1|BA|C|2806
4V9I|1|BA|G|2807
4V9I|1|BA|U|2808
4V9I|1|BA|C|2809
4V9I|1|BA|A|2810
4V9I|1|BA|A|2811
4V9I|1|BA|G|2812
4V9I|1|BA|C|2813
4V9I|1|BA|C|2814

Current chains

Chain BA

23S ribosomal RNA

Nearby chains