HL_4V9I_118
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_118 not in the Motif Atlas
- Homologous match to HL_4LFB_007
- Geometric discrepancy: 0.0907
- The information below is about HL_4LFB_007
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
4V9I|1|CA|U|292
4V9I|1|CA|G|293
4V9I|1|CA|A|294
4V9I|1|CA|G|295
4V9I|1|CA|A|296
4V9I|1|CA|G|297
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CD
- 30S Ribosomal protein S4
- Chain CE
- 30S Ribosomal protein S5
- Chain CL
- 30S Ribosomal protein S12
- Chain CQ
- 30S Ribosomal protein S17
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