HL_4V9I_119

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_119 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0826

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9I|1|CA|C|316
4V9I|1|CA|A|317
4V9I|1|CA|C|318
4V9I|1|CA|U|319
4V9I|1|CA|G|320
4V9I|1|CA|A|321
4V9I|1|CA|G|322
4V9I|1|CA|A|323
4V9I|1|CA|C|324
4V9I|1|CA|A|325
4V9I|1|CA|C|326
4V9I|1|CA|G|327
4V9I|1|CA|G|328
4V9I|1|CA|G|329

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal protein S16

Chain CT

30S Ribosomal protein S20