3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
4V9I|1|CA|A|340
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V9I_120 not in the Motif Atlas
Homologous match to HL_6CZR_080
Geometric discrepancy: 0.1568
The information below is about HL_6CZR_080
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.4
Basepair signature
cWW-tSW-F
Number of instances in this motif group
58

Unit IDs

4V9I|1|CA|C|338
4V9I|1|CA|U|339
4V9I|1|CA|A|340
4V9I|1|CA|C|341
4V9I|1|CA|G|342
4V9I|1|CA|G|343

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain DO
50S ribosomal protein L14
Chain DT
50S ribosomal protein L19

Coloring options:


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