HL_4V9I_122

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V9I|1|CA|U|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_122 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.1344

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V9I|1|CA|C|415
4V9I|1|CA|U|416
4V9I|1|CA|U|417
4V9I|1|CA|C|418
4V9I|1|CA|G|419
4V9I|1|CA|G|420

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal protein S3

Chain CD

30S Ribosomal protein S4