HL_4V9I_133

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_133 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1375

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9I|1|CA|U|991
4V9I|1|CA|G|992
4V9I|1|CA|A|993
4V9I|1|CA|A|994
4V9I|1|CA|A|995
4V9I|1|CA|G|996

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S Ribosomal protein S14

Chain CS

30S Ribosomal protein S19