HL_4V9I_134

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_134 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0966

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9I|1|CA|C|1059
4V9I|1|CA|G|1060
4V9I|1|CA|U|1061
4V9I|1|CA|G|1062
4V9I|1|CA|A|1063
4V9I|1|CA|G|1064

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal protein S2

Chain CE

30S Ribosomal protein S5