HL_4V9I_140
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 4V9I|1|CA|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_140 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0892
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V9I|1|CA|G|1338
4V9I|1|CA|A|1339
4V9I|1|CA|U|1340
4V9I|1|CA|C|1341
4V9I|1|CA|A|1342
4V9I|1|CA|G|1343
4V9I|1|CA|C|1344
4V9I|1|CA|C|1345
4V9I|1|CA|A|1346
4V9I|1|CA|U|1347
4V9I|1|CA|G|1348
4V9I|1|CA|C|1349
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CC
- 30S Ribosomal protein S3
- Chain CI
- 30S Ribosomal protein S9
- Chain CJ
- 30S Ribosomal protein S10
- Chain CM
- 30S Ribosomal protein S13
- Chain CN
- 30S Ribosomal protein S14
- Chain CU
- 30S Ribosomal protein THX
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