HL_4V9I_149
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGAGCGGCUGAAG
- Length
- 14 nucleotides
- Bulged bases
- 4V9I|1|CY|C|16, 4V9I|1|CY|G|17
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96239.1
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R
- Number of instances in this motif group
- 1
Unit IDs
4V9I|1|CY|C|11
4V9I|1|CY|G|12
4V9I|1|CY|G|13
4V9I|1|CY|A|14
4V9I|1|CY|G|15
4V9I|1|CY|C|16
4V9I|1|CY|G|17
4V9I|1|CY|G|18
4V9I|1|CY|C|19
4V9I|1|CY|U|20
4V9I|1|CY|G|21
4V9I|1|CY|A|22
4V9I|1|CY|A|23
4V9I|1|CY|G|24
Current chains
- Chain CY
- A-SITE tRNA
Nearby chains
- Chain CV
- Transfer RNA; tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: