HL_4V9I_157

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V9I|1|DA|A|184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_157 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0873

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V9I|1|DA|G|182
4V9I|1|DA|A|183
4V9I|1|DA|A|184
4V9I|1|DA|A|185
4V9I|1|DA|C|186
4V9I|1|DA|A|187
4V9I|1|DA|U|188
4V9I|1|DA|C|189

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DP

50S ribosomal protein L15