HL_4V9I_181

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4V9I|1|DA|G|1217, 4V9I|1|DA|A|1218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_181 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2688

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V9I|1|DA|G|1215
4V9I|1|DA|G|1216
4V9I|1|DA|G|1217
4V9I|1|DA|A|1218
4V9I|1|DA|U|1219
4V9I|1|DA|G|1220
4V9I|1|DA|A|1221
4V9I|1|DA|C|1222
4V9I|1|DA|C|1223

Current chains

Chain DA

23S ribosomal RNA

Nearby chains