HL_4V9I_194

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUGAUGAGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_194 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3844

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4V9I|1|DA|G|1762
4V9I|1|DA|G|1763
4V9I|1|DA|U|1764
4V9I|1|DA|G|1765
4V9I|1|DA|A|1766
4V9I|1|DA|U|1767
4V9I|1|DA|G|1768
4V9I|1|DA|A|1769
4V9I|1|DA|G|1770
4V9I|1|DA|C|1771
4V9I|1|DA|C|1772

Current chains

Chain DA

23S ribosomal RNA

Nearby chains