HL_4V9I_210

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V9I|1|DA|U|2417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_210 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.07

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V9I|1|DA|C|2415
4V9I|1|DA|G|2416
4V9I|1|DA|U|2417
4V9I|1|DA|G|2418
4V9I|1|DA|U|2419
4V9I|1|DA|G|2420
4V9I|1|DA|G|2421
4V9I|1|DA|A|2422
4V9I|1|DA|A|2423
4V9I|1|DA|G|2424

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DP

50S ribosomal protein L15