HL_4V9I_215

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_215 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3074

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V9I|1|DA|C|2669
4V9I|1|DA|G|2670
4V9I|1|DA|A|2671
4V9I|1|DA|G|2672
4V9I|1|DA|A|2673
4V9I|1|DA|G|2674

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6