HL_4V9I_227

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUGCCAGCGGUUCGGCCGGGCACUC

Length

26 nucleotides

Bulged bases

4V9I|1|AA|U|1125, 4V9I|1|AA|U|1135, 4V9I|1|AA|U|1136, 4V9I|1|AA|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|AA|G|1124
4V9I|1|AA|U|1125
4V9I|1|AA|U|1126
4V9I|1|AA|G|1127
4V9I|1|AA|C|1128
4V9I|1|AA|C|1129
4V9I|1|AA|A|1130
4V9I|1|AA|G|1131
4V9I|1|AA|C|1132
4V9I|1|AA|G|1133
4V9I|1|AA|G|1134
4V9I|1|AA|U|1135
4V9I|1|AA|U|1136
4V9I|1|AA|C|1137
4V9I|1|AA|G|1138
4V9I|1|AA|G|1139
4V9I|1|AA|C|1140
4V9I|1|AA|C|1141
4V9I|1|AA|G|1142
4V9I|1|AA|G|1143
4V9I|1|AA|G|1144
4V9I|1|AA|C|1145
4V9I|1|AA|A|1146
4V9I|1|AA|C|1147
4V9I|1|AA|U|1148
4V9I|1|AA|C|1149

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S Ribosomal protein S9

Chain AJ

30S Ribosomal protein S10