HL_4V9I_228

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCGAAAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_228 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3003

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9I|1|AA|C|1163
4V9I|1|AA|G|1164
4V9I|1|AA|C|1165
4V9I|1|AA|G|1166
4V9I|1|AA|A|1168
4V9I|1|AA|A|1169
4V9I|1|AA|A|1170
4V9I|1|AA|G|1171
4V9I|1|AA|C|1172
4V9I|1|AA|G|1173

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S Ribosomal protein S2

Chain AG

30S Ribosomal protein S7

Chain CJ

30S Ribosomal protein S10