HL_4V9I_233

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V9I|1|CA|U|823, 4V9I|1|CA|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_233 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3069

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V9I|1|CA|G|821
4V9I|1|CA|G|822
4V9I|1|CA|U|823
4V9I|1|CA|C|824
4V9I|1|CA|U|825
4V9I|1|CA|C|826
4V9I|1|CA|C|827

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal protein S2

Chain CR

30S Ribosomal protein S18