HL_4V9I_239

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V9I|1|DA|G|2318, 4V9I|1|DA|A|2321, 4V9I|1|DA|A|2322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|DA|G|2313
4V9I|1|DA|G|2314
4V9I|1|DA|G|2315
4V9I|1|DA|A|2316
4V9I|1|DA|C|2317
4V9I|1|DA|G|2318
4V9I|1|DA|G|2319
4V9I|1|DA|A|2320
4V9I|1|DA|A|2321
4V9I|1|DA|A|2322
4V9I|1|DA|U|2323
4V9I|1|DA|C|2324
4V9I|1|DA|C|2325

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5