HL_4V9J_140

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CUCAGUUGGUUAGAG

Length

15 nucleotides

Bulged bases

4V9J|1|CW|U|16, 4V9J|1|CW|U|17, 4V9J|1|CW|G|18, 4V9J|1|CW|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9J_140 not in the Motif Atlas

Homologous match to HL_4V9I_038

Geometric discrepancy: 0.4465

The information below is about HL_4V9I_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9J|1|CW|C|11
4V9J|1|CW|U|12
4V9J|1|CW|C|13
4V9J|1|CW|A|14
4V9J|1|CW|G|15
4V9J|1|CW|U|16
4V9J|1|CW|U|17
4V9J|1|CW|G|18
4V9J|1|CW|G|19
4V9J|1|CW|U|20
4V9J|1|CW|U|20|||A
4V9J|1|CW|A|21
4V9J|1|CW|G|22
4V9J|1|CW|A|23
4V9J|1|CW|G|24

Current chains

Chain CW

tRNA-Met

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA