HL_4V9K_015
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9K_015 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.1558
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V9K|1|AA|C|689
4V9K|1|AA|G|690
4V9K|1|AA|G|691
4V9K|1|AA|U|692
4V9K|1|AA|G|693
4V9K|1|AA|A|694
4V9K|1|AA|A|695
4V9K|1|AA|A|696
4V9K|1|AA|U|697
4V9K|1|AA|G|698
Current chains
- Chain AA
- ribosomal RNA 16S
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain AV
- messenger RNA
- Chain AW
- Transfer RNA; tRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: