HL_4V9K_141
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- ACUCAUAAU
- Length
- 9 nucleotides
- Bulged bases
- 4V9K|1|CW|C|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9K_141 not in the Motif Atlas
- Homologous match to HL_4V9K_034
- Geometric discrepancy: 0.1686
- The information below is about HL_4V9K_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
4V9K|1|CW|A|31
4V9K|1|CW|C|32
4V9K|1|CW|U|33
4V9K|1|CW|C|34
4V9K|1|CW|A|35
4V9K|1|CW|U|36
4V9K|1|CW|A|37
4V9K|1|CW|A|38
4V9K|1|CW|U|39
Current chains
- Chain CW
- transfer RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CI
- 30S ribosomal protein S9
- Chain CM
- 30S ribosomal protein S13
- Chain CV
- messenger RNA
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