HL_4V9K_164
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGUGAGAC
- Length
- 9 nucleotides
- Bulged bases
- 4V9K|1|DA|A|712|||B
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9K_164 not in the Motif Atlas
- Homologous match to HL_7RQB_022
- Geometric discrepancy: 0.1533
- The information below is about HL_7RQB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84085.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4V9K|1|DA|G|712
4V9K|1|DA|A|712|||B
4V9K|1|DA|G|713
4V9K|1|DA|U|714
4V9K|1|DA|G|715
4V9K|1|DA|A|716
4V9K|1|DA|G|717
4V9K|1|DA|A|718
4V9K|1|DA|C|719
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CO
- 30S ribosomal protein S15
- Chain CQ
- 30S ribosomal protein S17
- Chain DD
- 50S ribosomal protein L2
- Chain DR
- 50S ribosomal protein L17
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