HL_4V9K_169

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4V9K|1|DA|U|958, 4V9K|1|DA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_169 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1202

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V9K|1|DA|C|955
4V9K|1|DA|G|956
4V9K|1|DA|A|957
4V9K|1|DA|U|958
4V9K|1|DA|A|959
4V9K|1|DA|A|960
4V9K|1|DA|C|961
4V9K|1|DA|G|962

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DQ

50S ribosomal protein L16