HL_4V9K_171

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V9K|1|DA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_171 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1841

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V9K|1|DA|C|1064
4V9K|1|DA|U|1065
4V9K|1|DA|U|1066
4V9K|1|DA|A|1067
4V9K|1|DA|G|1068
4V9K|1|DA|A|1069
4V9K|1|DA|A|1070
4V9K|1|DA|G|1071
4V9K|1|DA|C|1072
4V9K|1|DA|A|1073
4V9K|1|DA|G|1074

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

Elongation factor G

Chain DK

50S ribosomal protein L11

Chain DQ

50S ribosomal protein L16