HL_4V9L_024

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_024 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.1668

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V9L|1|AA|C|1076
4V9L|1|AA|G|1077
4V9L|1|AA|U|1078
4V9L|1|AA|G|1079
4V9L|1|AA|A|1080
4V9L|1|AA|G|1081

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5