4V9L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V9L_001 | 1/AA/12:22 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_4V9L_002 | 1/AA/68J:68P | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_4V9L_003 | 1/AA/158:163 | GNRA | homologous HL_6CZR_074 NA | |
| HL_4V9L_004 | 1/AA/186F:186K | No text annotation | homologous HL_6CZR_075 NA | |
| HL_4V9L_005 | 1/AA/201:216 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V9L_006 | 1/AA/259:267 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_4V9L_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_4V9L_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V9L_009 | 1/AA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V9L_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_4V9L_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V9L_012 | 1/AA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_4V9L_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V9L_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4V9L_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4V9L_016 | 1/AA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_4V9L_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V9L_018 | 1/AA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V9L_019 | 1/AA/862:867 | GNRA | homologous HL_6CZR_090 NA | |
| HL_4V9L_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4V9L_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V9L_216 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4V9L_023 | 1/AA/1028B:1028G | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_4V9L_024 | 1/AA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_4V9L_025 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V9L_026 | 1/AA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V9L_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4V9L_028 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_4V9L_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V9L_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V9L_031 | 1/AA/1440G:1440L | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V9L_032 | 1/AA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4V9L_217 | 1/AW/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_4V9L_034 | 1/AW/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.7 | |
| HL_4V9L_035 | 1/AW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5X6B_003 HL_28252.9 | |
| HL_4V9L_036 | 1/BA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V9L_037 | 1/BA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V9L_038 | 1/BA/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.2 | |
| HL_4V9L_039 | 1/BA/137B:141B | No text annotation | ||
| HL_4V9L_218 | 1/BA/163:1635 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_039 HL_57176.2 | |
| HL_4V9L_041 | 1/BA/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_4V9L_042 | 1/BA/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_4V9L_043 | 1/BA/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_4V9L_044 | 1/BA/270K:270Q | No text annotation | homologous HL_8VTW_008 NA | |
| HL_4V9L_045 | 1/BA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V9L_046 | 1/BA/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_4V9L_047 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V9L_219 | 1/BA/383:391 | No text annotation | ||
| HL_4V9L_049 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V9L_050 | 1/BA/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_4V9L_051 | 1/BA/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V9L_052 | 1/BA/544:549 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_4V9L_053 | 1/BA/566:575 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_28252.9 | |
| HL_4V9L_054 | 1/BA/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V9L_055 | 1/BA/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_4V9L_056 | 1/BA/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
| HL_4V9L_058 | 1/BA/744:753 | No text annotation | homologous HL_8VTW_022 NA | |
| HL_4V9L_059 | 1/BA/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V9L_060 | 1/BA/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
| HL_4V9L_061 | 1/BA/884:892 | No text annotation | homologous HL_9DFE_024 HL_87553.1 | |
| HL_4V9L_062 | 1/BA/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
| HL_4V9L_063 | 1/BA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V9L_064 | 1/BA/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4V9L_065 | 1/BA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V9L_066 | 1/BA/1171:1178 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_4V9L_067 | 1/BA/1222:1227 | GNRA | geometric HL_7RQB_063 NA | |
| HL_4V9L_068 | 1/BA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V9L_069 | 1/BA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_4V9L_070 | 1/BA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V9L_071 | 1/BA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V9L_072 | 1/BA/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4V9L_073 | 1/BA/1492:1498 | No text annotation | ||
| HL_4V9L_074 | 1/BA/1533:1538 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V9L_075 | 1/BA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_4V9L_076 | 1/BA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V9L_078 | 1/BA/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_4V9L_079 | 1/BA/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4V9L_080 | 1/BA/1752:1756 | No text annotation | homologous HL_4WF9_042 HL_80709.3 | |
| HL_4V9L_081 | 1/BA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4V9L_082 | 1/BA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V9L_083 | 1/BA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V9L_084 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V9L_085 | 1/BA/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_4V9L_086 | 1/BA/1992:1996 | No text annotation | ||
| HL_4V9L_087 | 1/BA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V9L_088 | 1/BA/2143:2148 | No text annotation | homologous HL_7RQB_051 NA | |
| HL_4V9L_089 | 1/BA/2209:2215 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4V9L_090 | 1/BA/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_4V9L_091 | 1/BA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V9L_092 | 1/BA/2304:2312 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
| HL_4V9L_093 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_7A0S_055 HL_93324.4 | |
| HL_4V9L_094 | 1/BA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V9L_095 | 1/BA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V9L_096 | 1/BA/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_4V9L_097 | 1/BA/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V9L_098 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V9L_099 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V9L_100 | 1/BA/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.8 | |
| HL_4V9L_101 | 1/BA/2658:2663 | GNRA | geometric HL_5UZ6_001 HL_37824.8 | |
| HL_4V9L_102 | 1/BA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V9L_103 | 1/BA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V9L_220 | 1/BA/2794:2802 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V9L_105 | 1/BA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V9L_106 | 1/BA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V9L_107 | 1/BB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V9L_108 | 1/BB/86:90 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4V9L_109 | 1/CA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V9L_110 | 1/CA/68J:68P | No text annotation | homologous HL_4LFB_002 HL_31585.4 | |
| HL_4V9L_111 | 1/CA/158:163 | GNRA | homologous HL_6CZR_074 NA | |
| HL_4V9L_112 | 1/CA/186F:186K | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_4V9L_113 | 1/CA/201:216 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V9L_114 | 1/CA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V9L_115 | 1/CA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_4V9L_116 | 1/CA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V9L_117 | 1/CA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V9L_118 | 1/CA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_4V9L_119 | 1/CA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V9L_120 | 1/CA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_4V9L_121 | 1/CA/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4V9L_122 | 1/CA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4V9L_123 | 1/CA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4V9L_124 | 1/CA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_4V9L_125 | 1/CA/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_4V9L_126 | 1/CA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V9L_127 | 1/CA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4V9L_128 | 1/CA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4V9L_129 | 1/CA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V9L_130 | 1/CA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4V9L_131 | 1/CA/1028B:1028G | No text annotation | ||
| HL_4V9L_132 | 1/CA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_4V9L_133 | 1/CA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4V9L_134 | 1/CA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V9L_135 | 1/CA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4V9L_136 | 1/CA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_4V9L_137 | 1/CA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V9L_138 | 1/CA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V9L_139 | 1/CA/1440G:1440L | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V9L_140 | 1/CA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4V9L_221 | 1/CW/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_4V9L_142 | 1/CW/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.7 | |
| HL_4V9L_143 | 1/CW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA | |
| HL_4V9L_144 | 1/DA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V9L_145 | 1/DA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V9L_146 | 1/DA/123:128 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_4V9L_147 | 1/DA/137B:141B | No text annotation | ||
| HL_4V9L_222 | 1/DA/163:1635 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_039 HL_57176.2 | |
| HL_4V9L_149 | 1/DA/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_4V9L_150 | 1/DA/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_4V9L_151 | 1/DA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V9L_152 | 1/DA/270K:270Q | No text annotation | geometric HL_5WTI_001 HL_08100.1 | |
| HL_4V9L_153 | 1/DA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V9L_154 | 1/DA/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_4V9L_155 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4V9L_156 | 1/DA/383:391 | No text annotation | ||
| HL_4V9L_157 | 1/DA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V9L_158 | 1/DA/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_4V9L_159 | 1/DA/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V9L_160 | 1/DA/544:549 | GNRA | geometric HL_6JDV_001 HL_37824.8 | |
| HL_4V9L_161 | 1/DA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_28252.9 | |
| HL_4V9L_162 | 1/DA/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V9L_163 | 1/DA/629:634 | GNRA | homologous HL_4WF9_020 HL_37824.8 | |
| HL_4V9L_164 | 1/DA/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
| HL_4V9L_166 | 1/DA/744:753 | No text annotation | homologous HL_8VTW_022 NA | |
| HL_4V9L_167 | 1/DA/779:785 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V9L_168 | 1/DA/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
| HL_4V9L_169 | 1/DA/884:892 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_4V9L_170 | 1/DA/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.8 | |
| HL_4V9L_171 | 1/DA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V9L_172 | 1/DA/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4V9L_173 | 1/DA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V9L_174 | 1/DA/1171:1178 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_4V9L_175 | 1/DA/1222:1227 | GNRA | geometric HL_2Z75_004 HL_37824.8 | |
| HL_4V9L_176 | 1/DA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V9L_177 | 1/DA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V9L_178 | 1/DA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V9L_179 | 1/DA/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V9L_180 | 1/DA/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4V9L_181 | 1/DA/1492:1498 | No text annotation | ||
| HL_4V9L_182 | 1/DA/1533:1538 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_4V9L_183 | 1/DA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_4V9L_184 | 1/DA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V9L_186 | 1/DA/1691:1696 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
| HL_4V9L_187 | 1/DA/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4V9L_188 | 1/DA/1752:1756 | No text annotation | homologous HL_4WF9_042 HL_80709.3 | |
| HL_4V9L_189 | 1/DA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V9L_190 | 1/DA/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4V9L_191 | 1/DA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V9L_192 | 1/DA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V9L_193 | 1/DA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V9L_194 | 1/DA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V9L_224 | 1/DA/2144:2147 | No text annotation | geometric HL_2CZJ_009 HL_78677.1 | |
| HL_4V9L_196 | 1/DA/2209:2215 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4V9L_197 | 1/DA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V9L_198 | 1/DA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V9L_223 | 1/DA/2304:2312 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
| HL_4V9L_200 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
| HL_4V9L_201 | 1/DA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V9L_202 | 1/DA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V9L_203 | 1/DA/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_4V9L_204 | 1/DA/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V9L_205 | 1/DA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V9L_206 | 1/DA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V9L_207 | 1/DA/2594:2599 | GNRA | homologous HL_7A0S_062 HL_37824.8 | |
| HL_4V9L_208 | 1/DA/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.8 | |
| HL_4V9L_209 | 1/DA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V9L_210 | 1/DA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V9L_211 | 1/DA/2794:2802 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V9L_212 | 1/DA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V9L_213 | 1/DA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V9L_214 | 1/DB/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_4V9L_215 | 1/DB/86:90 | GNRA | homologous HL_4V9F_072 HL_37824.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V9L_022 | No text annotation | ||
| HL_4V9L_033 | No text annotation | ||
| HL_4V9L_040 | No text annotation | ||
| HL_4V9L_048 | No text annotation | ||
| HL_4V9L_057 | No text annotation | ||
| HL_4V9L_077 | Externally structured | ||
| HL_4V9L_104 | No text annotation | ||
| HL_4V9L_141 | No text annotation | ||
| HL_4V9L_148 | UNCG variation | ||
| HL_4V9L_165 | No text annotation | ||
| HL_4V9L_185 | Pseudoknot geometry with 3' bulge | ||
| HL_4V9L_195 | No text annotation | ||
| HL_4V9L_199 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V9L_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_4V9L_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4V9L_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V9L_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V9L_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_4V9L_006 | 1/AA/67:68A, 1/AA/68Y:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V9L_008 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4V9L_009 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V9L_010 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V9L_011 | 1/AA/186:186B, 1/AA/186O:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V9L_012 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V9L_013 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V9L_014 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V9L_015 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_4V9L_016 | 1/AA/371:375, 1/AA/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_4V9L_017 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.14 | |
| IL_4V9L_019 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V9L_020 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4V9L_021 | 1/AA/450:455, 1/AA/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4V9L_022 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4V9L_023 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9L_024 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_4V9L_025 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V9L_026 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V9L_027 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V9L_028 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V9L_029 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4V9L_030 | 1/AA/657:658, 1/AA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V9L_031 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_4V9L_367 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_4V9L_033 | 1/AA/683:688, 1/AA/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_4V9L_034 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V9L_035 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V9L_036 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V9L_037 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_4V9L_038 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_4V9L_039 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V9L_040 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V9L_041 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_4V9L_042 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4V9L_043 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V9L_044 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4V9L_045 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_4V9L_046 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
| IL_4V9L_047 | 1/AA/1124:1127, 1/AA/1145:1149 | No text annotation | ||
| IL_4V9L_048 | 1/AA/1127:1128, 1/AA/1143:1145 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_4V9L_049 | 1/AA/1128:1132, 1/AA/1142:1143 | Minor groove platform | geometric IL_4LFB_049 IL_15052.4 | |
| IL_4V9L_050 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4V9L_051 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V9L_052 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V9L_053 | 1/AA/1259:1260, 1/AA/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_4V9L_054 | 1/AA/1260:1262, 1/AA/1273:1274 | Minor groove platform | geometric IL_4UYK_001 IL_51454.3 | |
| IL_4V9L_055 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V9L_056 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V9L_057 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9L_058 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_4V9L_059 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_5Z1I_003 NA | |
| IL_4V9L_060 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V9L_061 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V9L_062 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4V9L_063 | 1/AA/1435:1437, 1/AA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_4V9L_064 | 1/AA/1440:1440E, 1/AA/1440N:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_4V9L_065 | 1/AW/50:52, 1/AW/62:64 | Isolated non-canonical cWW pair | homologous IL_4V9K_064 IL_87907.2 | |
| IL_4V9L_066 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V9L_067 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V9L_068 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4V9L_070 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V9L_074 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_4V9L_075 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V9L_076 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V9L_078 | 1/BA/273A:273B, 1/BA/363F:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V9L_079 | 1/BA/273G:278, 1/BA/362:363A | No text annotation | ||
| IL_4V9L_080 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V9L_389 | 1/BA/288:290, 1/BA/350:353 | No text annotation | homologous IL_9DFE_010 IL_85599.2 | |
| IL_4V9L_082 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V9L_083 | 1/BA/481:484, 1/BA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V9L_084 | 1/BA/564:566, 1/BA/575:577 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_87907.2 | |
| IL_4V9L_085 | 1/BA/606:609B, 1/BA/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_4V9L_086 | 1/BA/672:674, 1/BA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_4V9L_087 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | geometric IL_7A0S_015 IL_54041.2 | |
| IL_4V9L_088 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | homologous IL_7A0S_016 IL_31462.7 | |
| IL_4V9L_089 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V9L_090 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V9L_091 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V9L_092 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V9L_093 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_4V9L_094 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V9L_095 | 1/BA/846:850, 1/BA/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V9L_096 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4V9F_033 IL_38862.4 | |
| IL_4V9L_097 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4V9L_098 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V9L_100 | 1/BA/875:877, 1/BA/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_4V9L_101 | 1/BA/877:879, 1/BA/898:899 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_4V9L_102 | 1/BA/880:881, 1/BA/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_4V9L_103 | 1/BA/952:954, 1/BA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V9L_104 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V9L_105 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V9L_106 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_4V9L_107 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V9L_109 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V9L_110 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4V9L_111 | 1/BA/1043:1051, 1/BA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V9L_112 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation | ||
| IL_4V9L_113 | 1/BA/1087:1091, 1/BA/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_4V9L_114 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V9L_115 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V9L_368 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_9DFE_046 IL_70923.9 | |
| IL_4V9L_117 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A | geometric IL_7RQB_048 NA | |
| IL_4V9L_119 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V9L_120 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V9L_121 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V9L_122 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V9L_123 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_7A0S_049 IL_17136.7 | |
| IL_4V9L_124 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V9L_125 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V9L_126 | 1/BA/1433:1435, 1/BA/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
| IL_4V9L_127 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V9L_369 | 1/BA/1448:1449, 1/BA/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_4V9L_128 | 1/BA/1469:1473, 1/BA/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V9L_129 | 1/BA/1481:1483, 1/BA/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V9L_130 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V9L_370 | 1/BA/1526:1530, 1/BA/1541:154 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
| IL_4V9L_131 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
| IL_4V9L_371 | 1/BA/1663:1665, 1/BA/1995:1997 | No text annotation | homologous IL_9DFE_064 IL_67095.2 | |
| IL_4V9L_372 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_8VTW_065 NA | |
| IL_4V9L_373 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | geometric IL_8VTW_350 NA | |
| IL_4V9L_374 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_76758.2 | |
| IL_4V9L_132 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_4V9L_133 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V9L_134 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_4V9L_135 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V9L_375 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4V9L_137 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V9L_138 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.2 | |
| IL_4V9L_139 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V9L_140 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | geometric IL_7A0S_071 IL_22551.4 | |
| IL_4V9L_141 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4V9L_142 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4V9L_143 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_4V9L_144 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4V9L_145 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_4V9L_146 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V9L_147 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V9L_148 | 1/BA/2108:2110, 1/BA/2179:2181 | No text annotation | homologous IL_7RQB_084 NA | |
| IL_4V9L_149 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_4V9L_150 | 1/BA/2124:2127, 1/BA/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V9L_151 | 1/BA/2129:2136, 1/BA/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V9L_152 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_4V9L_153 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V9L_154 | 1/BA/2401:2403, 1/BA/2414:2415 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_4V9L_155 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4V9L_156 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | geometric IL_5J7L_320 IL_48076.6 | |
| IL_4V9L_157 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4V9L_158 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V9L_159 | 1/BA/2466:2470, 1/BA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V9L_160 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4V9L_161 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4V9L_162 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_4V9L_163 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V9L_164 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V9L_165 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_4V9L_166 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_4V9L_167 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V9L_168 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V9L_170 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V9L_171 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V9L_172 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V9L_173 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_4V9L_175 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.7 | |
| IL_4V9L_176 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V9L_177 | 1/BB/30:31, 1/BB/51:54 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_4V9L_178 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V9L_179 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V9L_376 | 1/CA/30:32, 1/CA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_4V9L_182 | 1/CA/44:45, 1/CA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4V9L_183 | 1/CA/47:52, 1/CA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V9L_184 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V9L_185 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_4V9L_186 | 1/CA/67:68A, 1/CA/68Y:102 | Isolated non-canonical cWW pair | geometric IL_6CZR_118 NA | |
| IL_4V9L_189 | 1/CA/129:131, 1/CA/231:232 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_4V9L_190 | 1/CA/132:136, 1/CA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V9L_192 | 1/CA/148:153, 1/CA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V9L_193 | 1/CA/186:186B, 1/CA/186O:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V9L_194 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V9L_195 | 1/CA/249:252, 1/CA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V9L_196 | 1/CA/292:293, 1/CA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_4V9L_197 | 1/CA/367:369, 1/CA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_4V9L_198 | 1/CA/371:375, 1/CA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V9L_199 | 1/CA/375:376, 1/CA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_4V9L_377 | 1/CA/409:416, 1/CA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V9L_202 | 1/CA/446:450, 1/CA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4V9L_203 | 1/CA/450:455, 1/CA/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4V9L_204 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4V9L_205 | 1/CA/515:521, 1/CA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9L_206 | 1/CA/569:575, 1/CA/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_4V9L_207 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V9L_208 | 1/CA/594:596, 1/CA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V9L_209 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V9L_210 | 1/CA/605:612, 1/CA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V9L_211 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4V9L_212 | 1/CA/657:658, 1/CA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V9L_213 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_4V9L_214 | 1/CA/673:678, 1/CA/712:717 | No text annotation | homologous IL_4LFB_030 NA | |
| IL_4V9L_215 | 1/CA/683:688, 1/CA/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_4V9L_216 | 1/CA/774:778, 1/CA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V9L_217 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4V9L_218 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V9L_378 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_4V9L_379 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_4V9L_221 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V9L_222 | 1/CA/953:954, 1/CA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V9L_223 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4V9L_224 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V9L_225 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V9L_226 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_4V9L_227 | 1/CA/1061:1063, 1/CA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4KZD_003 IL_28037.2 | |
| IL_4V9L_230 | 1/CA/1124:1127, 1/CA/1145:1149 | No text annotation | ||
| IL_4V9L_231 | 1/CA/1127:1128, 1/CA/1143:1145 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_4V9L_232 | 1/CA/1128:1132, 1/CA/1142:1143 | Minor groove platform | geometric IL_5J7L_007 IL_15052.4 | |
| IL_4V9L_233 | 1/CA/1158:1161, 1/CA/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4V9L_234 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V9L_235 | 1/CA/1255:1258, 1/CA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V9L_236 | 1/CA/1259:1262, 1/CA/1273:1276 | Double sheared | geometric IL_4V88_471 NA | |
| IL_4V9L_237 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_4V9L_238 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V9L_239 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9L_240 | 1/CA/1405:1407, 1/CA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_4V9L_241 | 1/CA/1407:1409, 1/CA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V9L_242 | 1/CA/1412:1414, 1/CA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
| IL_4V9L_243 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_4V9L_244 | 1/CA/1431:1435, 1/CA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4V9L_245 | 1/CA/1435:1437, 1/CA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_5TBW_046 NA | |
| IL_4V9L_246 | 1/CA/1440:1440E, 1/CA/1440N:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_4V9L_248 | 1/CW/50:52, 1/CW/62:64 | Isolated non-canonical cWW pair | homologous IL_4V9K_064 IL_87907.2 | |
| IL_4V9L_249 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V9L_250 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
| IL_4V9L_251 | 1/DA/43:44, 1/DA/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4V9L_253 | 1/DA/81:85, 1/DA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V9L_257 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_4V9L_258 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V9L_259 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V9L_261 | 1/DA/273A:273B, 1/DA/363F:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V9L_262 | 1/DA/273G:278, 1/DA/362:363A | No text annotation | ||
| IL_4V9L_263 | 1/DA/280:284, 1/DA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V9L_390 | 1/DA/288:290, 1/DA/350:353 | No text annotation | homologous IL_9DFE_010 IL_85599.2 | |
| IL_4V9L_265 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V9L_266 | 1/DA/481:484, 1/DA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V9L_267 | 1/DA/564:566, 1/DA/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_4V9L_268 | 1/DA/606:609B, 1/DA/618B:622 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.2 | |
| IL_4V9L_269 | 1/DA/672:674, 1/DA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_4V9L_270 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_4V9L_271 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.7 | |
| IL_4V9L_272 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | geometric IL_7A0S_017 IL_00225.14 | |
| IL_4V9L_273 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V9L_274 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V9L_275 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V9L_276 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_4V9L_277 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V9L_278 | 1/DA/846:850, 1/DA/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V9L_279 | 1/DA/858:862, 1/DA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4V9F_033 IL_38862.4 | |
| IL_4V9L_280 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4V9L_281 | 1/DA/864:868, 1/DA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V9L_283 | 1/DA/875:877, 1/DA/899:902 | Minor groove platform with extra cWW | homologous IL_7RQB_031 NA | |
| IL_4V9L_284 | 1/DA/877:879, 1/DA/898:899 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_4V9L_285 | 1/DA/880:881, 1/DA/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_4V9L_286 | 1/DA/952:954, 1/DA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V9L_287 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4V9L_288 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_4V9L_289 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4V9L_290 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V9L_292 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V9L_293 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V9L_294 | 1/DA/1043:1051, 1/DA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V9L_295 | 1/DA/1059:1062, 1/DA/1076:1079 | No text annotation | ||
| IL_4V9L_296 | 1/DA/1087:1091, 1/DA/1100:1102 | Major groove platform with extra cWW | geometric IL_1MMS_002 IL_51387.3 | |
| IL_4V9L_297 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V9L_298 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V9L_380 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_9DFE_046 IL_70923.9 | |
| IL_4V9L_300 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A | geometric IL_7RQB_048 NA | |
| IL_4V9L_302 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V9L_303 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_4V9L_304 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V9L_305 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V9L_381 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_4V9L_307 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V9L_308 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V9L_309 | 1/DA/1433:1435, 1/DA/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
| IL_4V9L_310 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V9L_382 | 1/DA/1448:1449, 1/DA/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_4V9L_311 | 1/DA/1469:1473, 1/DA/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V9L_312 | 1/DA/1481:1483, 1/DA/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V9L_314 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V9L_383 | 1/DA/1526:1530, 1/DA/1541:154 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
| IL_4V9L_315 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
| IL_4V9L_316 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_4V9L_317 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4V9L_384 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V9L_318 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_76758.2 | |
| IL_4V9L_319 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_4V9L_320 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V9L_385 | 1/DA/1798:1804, 1/DA/1813:1821 | No text annotation | homologous IL_9DFE_070 IL_17069.5 | |
| IL_4V9L_322 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4V9L_323 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4V9L_324 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V9L_325 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.2 | |
| IL_4V9L_326 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V9L_327 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
| IL_4V9L_328 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_4V9L_329 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_7A0S_073 IL_48076.6 | |
| IL_4V9L_330 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_4V9L_331 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4V9L_332 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V9L_333 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V9L_334 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V9L_335 | 1/DA/2108:2110, 1/DA/2179:2181 | No text annotation | homologous IL_7RQB_084 NA | |
| IL_4V9L_336 | 1/DA/2110:2120, 1/DA/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_4V9L_386 | 1/DA/2124:2127, 1/DA/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V9L_338 | 1/DA/2129:2136, 1/DA/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V9L_339 | 1/DA/2297:2299, 1/DA/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_4V9L_340 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V9L_341 | 1/DA/2401:2403, 1/DA/2414:2415 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_4V9L_342 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_4V9L_343 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | homologous IL_7A0S_084 IL_48076.6 | |
| IL_4V9L_387 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_4V9L_345 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4V9L_346 | 1/DA/2466:2470, 1/DA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V9L_347 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4V9L_348 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V9L_349 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_4V9L_350 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V9L_351 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V9L_388 | 1/DA/2636:2640, 1/DA/2774:2782 | No text annotation | homologous IL_9DFE_101 IL_04638.3 | |
| IL_4V9L_353 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V9L_354 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V9L_355 | 1/DA/2687:2691, 1/DA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_23774.1 | |
| IL_4V9L_357 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V9L_358 | 1/DA/2838:2839, 1/DA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V9L_359 | 1/DA/2843:2845, 1/DA/2871:2874 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
| IL_4V9L_360 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_4V9L_361 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V9L_362 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V9L_363 | 1/DB/30:31, 1/DB/51:54 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
| IL_4V9L_364 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V9L_365 | 1/DB/71:79, 1/DB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V9L_007 | No text annotation | ||
| IL_4V9L_018 | No text annotation | ||
| IL_4V9L_032 | No text annotation | ||
| IL_4V9L_069 | No text annotation | ||
| IL_4V9L_071 | No text annotation | ||
| IL_4V9L_072 | No text annotation | ||
| IL_4V9L_073 | No text annotation | ||
| IL_4V9L_077 | No text annotation | ||
| IL_4V9L_081 | No text annotation | ||
| IL_4V9L_099 | Isolated non-canonical cWW pair | ||
| IL_4V9L_108 | No text annotation | ||
| IL_4V9L_116 | No text annotation | ||
| IL_4V9L_118 | Not an internal loop | ||
| IL_4V9L_136 | Isolated non-canonical cWW with bulges | ||
| IL_4V9L_169 | Multiple bulged bases | ||
| IL_4V9L_174 | No text annotation | ||
| IL_4V9L_180 | Isolated non-canonical cWW pair | ||
| IL_4V9L_181 | No text annotation | ||
| IL_4V9L_187 | Isolated non-canonical cWW pair | ||
| IL_4V9L_188 | No text annotation | ||
| IL_4V9L_191 | Isolated non-canonical cWW pair | ||
| IL_4V9L_200 | Isolated non-canonical cWW pair | ||
| IL_4V9L_201 | No text annotation | ||
| IL_4V9L_219 | Isolated non-canonical cWW with bulges | ||
| IL_4V9L_220 | Decoding loop related | ||
| IL_4V9L_228 | Isolated non-canonical cWW pair | ||
| IL_4V9L_229 | No text annotation | ||
| IL_4V9L_247 | Isolated non-canonical cWW pair | ||
| IL_4V9L_252 | No text annotation | ||
| IL_4V9L_254 | No text annotation | ||
| IL_4V9L_255 | No text annotation | ||
| IL_4V9L_256 | No text annotation | ||
| IL_4V9L_260 | No text annotation | ||
| IL_4V9L_264 | No text annotation | ||
| IL_4V9L_282 | Isolated cWS basepair | ||
| IL_4V9L_291 | No text annotation | ||
| IL_4V9L_299 | No text annotation | ||
| IL_4V9L_301 | Not an internal loop | ||
| IL_4V9L_306 | tSH-tHW-tHS-cWW | ||
| IL_4V9L_313 | Isolated non-canonical cWW pair | ||
| IL_4V9L_321 | No text annotation | ||
| IL_4V9L_337 | No text annotation | ||
| IL_4V9L_344 | Major groove platform with extra pair | ||
| IL_4V9L_352 | No text annotation | ||
| IL_4V9L_356 | Multiple bulged bases | ||
| IL_4V9L_366 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V9L_033 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V9L_034 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V9L_035 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | geometric J3_1KUQ_001 J3_56052.5 | |
| J3_4V9L_036 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V9L_037 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
| J3_4V9L_001 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V9L_038 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V9L_002 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V9L_003 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V9L_004 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V9L_039 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V9L_005 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation | ||
| J3_4V9L_006 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4V9L_040 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V9L_007 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4V9L_041 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V9L_008 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V9L_042 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V9L_043 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V9L_044 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4V9L_045 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4V9L_046 | 1/BA/269:270, 1/BA/270:271, 1/BA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V9L_009 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_4V9L_010 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7A0S_005 J3_44724.7 | |
| J3_4V9L_011 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_4V9L_012 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V9L_013 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_4V9L_047 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V9L_048 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_4WF9_017 J3_34864.2 | |
| J3_4V9L_014 | 1/BA/2091:2093, 1/BA/2196:2205, 1/BA/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V9L_049 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_20992.1 | |
| J3_4V9L_015 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V9L_016 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V9L_050 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V9L_051 | 1/BB/11:16, 1/BB/68:69, 1/BB/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4V9L_052 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V9L_053 | 1/CA/46:52, 1/CA/359:367, 1/CA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V9L_054 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation | geometric J3_1KUQ_001 J3_56052.5 | |
| J3_4V9L_055 | 1/CA/586:588, 1/CA/651:655, 1/CA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V9L_056 | 1/CA/672:673, 1/CA/717:725, 1/CA/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
| J3_4V9L_017 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V9L_057 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V9L_018 | 1/CA/943:946, 1/CA/1235:1237, 1/CA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V9L_019 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V9L_020 | 1/CA/990:997, 1/CA/1044:1047, 1/CA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V9L_021 | 1/CA/1003:1006, 1/CA/1023:1027, 1/CA/1034:1037 | No text annotation | ||
| J3_4V9L_022 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4V9L_058 | 1/CA/1073:1074, 1/CA/1083:1087, 1/CA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V9L_023 | 1/CA/1116:1118, 1/CA/1155:1158, 1/CA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4V9L_059 | 1/CA/1116:1118, 1/CA/1155:1161, 1/CA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V9L_024 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V9L_060 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V9L_061 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V9L_062 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | ||
| J3_4V9L_063 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4V9L_064 | 1/DA/269:270, 1/DA/270:271, 1/DA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V9L_025 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_4V9L_026 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_7A0S_005 J3_44724.7 | |
| J3_4V9L_027 | 1/DA/1055:1057, 1/DA/1081:1087, 1/DA/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_4V9L_028 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V9L_029 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_4V9L_065 | 1/DA/1344:1350, 1/DA/1381:1385, 1/DA/1402:1403 | No text annotation | homologous J3_4WF9_016 J3_31965.2 | |
| J3_4V9L_066 | 1/DA/1424:1429, 1/DA/1564:1565, 1/DA/1568:1574 | No text annotation | homologous J3_4WF9_017 J3_34864.2 | |
| J3_4V9L_030 | 1/DA/2091:2093, 1/DA/2196:2205, 1/DA/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V9L_067 | 1/DA/2282:2284, 1/DA/2384:2395, 1/DA/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_20992.1 | |
| J3_4V9L_031 | 1/DA/2295:2297, 1/DA/2321:2323, 1/DA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V9L_032 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V9L_068 | 1/DA/2814:2815, 1/DA/2831:2836, 1/DA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V9L_069 | 1/DB/11:16, 1/DB/68:69, 1/DB/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J4_4V9L_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V9L_002 | 1/AA/142:144, 1/AA/178:183, 1/AA/194:198, 1/AA/219:221 | No text annotation | homologous J4_6CZR_012 NA | |
| J4_4V9L_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_4V9L_031 | 1/AW/7:10, 1/AW/25:27, 1/AW/43:49, 1/AW/65:66 | tRNA junction | homologous J4_4V9K_004 J4_70449.29 | |
| J4_4V9L_005 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V9L_006 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V9L_007 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V9L_008 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V9L_009 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V9L_010 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V9L_011 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/154:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V9L_012 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_4V9L_013 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V9L_014 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V9L_015 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4V9L_016 | 1/CA/115:122, 1/CA/239:240, 1/CA/286:289, 1/CA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V9L_017 | 1/CA/142:144, 1/CA/178:183, 1/CA/194:198, 1/CA/219:221 | No text annotation | homologous J4_6CZR_012 NA | |
| J4_4V9L_018 | 1/CA/575:577, 1/CA/764:769, 1/CA/810:821, 1/CA/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_4V9L_019 | 1/CW/7:10, 1/CW/25:27, 1/CW/43:49, 1/CW/65:66 | tRNA junction | homologous J4_4V9K_004 J4_70449.29 | |
| J4_4V9L_020 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V9L_021 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V9L_022 | 1/DA/601:604, 1/DA/624:628, 1/DA/635:638, 1/DA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V9L_023 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V9L_024 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V9L_025 | 1/DA/1313:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V9L_026 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/154:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V9L_027 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_4V9L_028 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V9L_029 | 1/DA/2285:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V9L_030 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_4V9L_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V9L_002 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4V9L_003 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V9L_004 | 1/BA/268:270, 1/BA/270:271, 1/BA/366:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | ||
| J5_4V9L_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V9L_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.5 | |
| J5_4V9L_007 | 1/BA/1666:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1994 | No text annotation | ||
| J5_4V9L_008 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_4V9L_009 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2507, 1/BA/2582:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V9L_010 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J5_4V9L_011 | 1/CA/36:39, 1/CA/403:406, 1/CA/436:442, 1/CA/492:500, 1/CA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V9L_012 | 1/CA/58:61, 1/CA/106:113, 1/CA/314:316, 1/CA/337:339, 1/CA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V9L_013 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V9L_014 | 1/DA/268:270, 1/DA/270:271, 1/DA/366:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | ||
| J5_4V9L_015 | 1/DA/531:533, 1/DA/560:564, 1/DA/577:579, 1/DA/1261:1262, 1/DA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V9L_016 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:812, 1/DA/1195:1196, 1/DA/1250:1256 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_4V9L_017 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1752, 1/DA/1756:1764, 1/DA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V9L_018 | 1/DA/2057:2064, 1/DA/2446:2453, 1/DA/2500:2507, 1/DA/2582:2588, 1/DA/2606:2611 | No text annotation | ||
| J5_4V9L_019 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2282, 1/DA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_4V9L_001 | 1/BA/45:46, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V9L_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J6_4V9L_003 | 1/DA/45:46, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J6_4V9L_004 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J7_4V9L_001 | 1/BA/817:822, 1/BA/835:836, 1/BA/943:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J7_4V9L_002 | 1/DA/817:822, 1/DA/835:836, 1/DA/943:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation | ||
| J8_4V9L_001 | 1/BA/7:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2792, 1/BA/2804:2811, 1/BA/2889:2896 | No text annotation | ||
| J8_4V9L_002 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2792, 1/BA/2804:2811, 1/BA/2889:2895 | No text annotation | ||
| J8_4V9L_003 | 1/DA/8:15, 1/DA/525:531, 1/DA/2018:2023, 1/DA/2040:2043, 1/DA/2625:2630, 1/DA/2788:2792, 1/DA/2804:2811, 1/DA/2889:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_4V9L_004 | No text annotation |
Coloring options: