HL_4V9L_220

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

4V9L|1|BA|U|2797, 4V9L|1|BA|C|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_220 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3504

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9L|1|BA|C|2794
4V9L|1|BA|G|2795
4V9L|1|BA|U|2797
4V9L|1|BA|C|2798
4V9L|1|BA|A|2799
4V9L|1|BA|A|2801
4V9L|1|BA|G|2802

Current chains

Chain BA

23S ribosomal RNA

Nearby chains