HL_4V9L_221

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGUUGGUUAG

Length

11 nucleotides

Bulged bases

4V9L|1|CW|U|16, 4V9L|1|CW|U|17, 4V9L|1|CW|G|18, 4V9L|1|CW|G|19, 4V9L|1|CW|U|20, 4V9L|1|CW|U|20|||A, 4V9L|1|CW|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_221 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.2741

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9L|1|CW|C|13
4V9L|1|CW|A|14
4V9L|1|CW|G|15
4V9L|1|CW|U|16
4V9L|1|CW|U|17
4V9L|1|CW|G|18
4V9L|1|CW|G|19
4V9L|1|CW|U|20
4V9L|1|CW|U|20|||A
4V9L|1|CW|A|21
4V9L|1|CW|G|22

Current chains

Chain CW

transfer RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA