HL_4V9M_014

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

4V9M|1|AA|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_014 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.1894

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4V9M|1|AA|G|617
4V9M|1|AA|C|618
4V9M|1|AA|U|619
4V9M|1|AA|C|620
4V9M|1|AA|A|621
4V9M|1|AA|A|622
4V9M|1|AA|C|623

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16