HL_4V9M_081

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4V9M|1|BA|A|1780, 4V9M|1|BA|C|1781, 4V9M|1|BA|C|1782, 4V9M|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_081 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.2836

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9M|1|BA|U|1777
4V9M|1|BA|U|1778
4V9M|1|BA|U|1779
4V9M|1|BA|A|1780
4V9M|1|BA|C|1781
4V9M|1|BA|C|1782
4V9M|1|BA|A|1783
4V9M|1|BA|A|1784
4V9M|1|BA|A|1785
4V9M|1|BA|A|1786
4V9M|1|BA|A|1787

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BW

50S ribosomal protein L22