HL_4V9M_130

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

4V9M|1|CA|C|1028|||D

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_130 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3922

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9M|1|CA|C|1028|||B
4V9M|1|CA|G|1028|||C
4V9M|1|CA|C|1028|||D
4V9M|1|CA|G|1028|||E
4V9M|1|CA|A|1028|||F
4V9M|1|CA|G|1028|||G

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains